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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus, cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
YLoc:nucleus
 cytosol: 18257679
nucleus: 18257679
plasma membrane: 27800704
gfp PMID: 18257679 doi
Y Wang, M Gao, Q Li, L Wang, J Wang, JS Jeon, N Qu, Y Zhang, Z He
Institute of Plant Physiology & Ecology, Chinese Academy of Sciences, Shangai, China.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0840100-01
Os02t0535400-01
Os03t0276500-01
Os04t0107900-02
Os05t0460000-01
Os07t0113700-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G11260.1 Os01t0840100-01 AT3G12580.1 18065690
AT4G11260.1 Os03t0276500-01 AT3G12580.1 18065690
AT4G11260.1 Os05t0460000-01 AT3G12580.1 18065690
AT4G11260.1 Os07t0113700-01 AT4G37460.1 21798944
AT4G11260.1 Os02t0535400-01 AT5G51700.1 11847307
AT4G11260.1 Os02t0535400-01 AT5G51700.1 18065690
AT4G11260.1 Os04t0107900-02 AT5G52640.1 18065690
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY43481 Canola cytosol 36.44 61.43
CDY28656 Canola cytosol 36.44 61.43
KRG94038 Soybean cytosol, mitochondrion, nucleus 25.42 41.1
CDY10892 Canola endoplasmic reticulum, golgi 65.25 40.74
CDY44118 Canola endoplasmic reticulum, plastid, vacuole 63.56 34.09
Bra019498.1-P Field mustard cytosol, plastid 57.63 30.77
EES01101 Sorghum cytosol 90.68 29.4
Zm00001d044172_P002 Maize extracellular 88.98 29.09
Solyc06g036420.1.1 Tomato cytosol 72.88 29.05
Zm00001d011401_P001 Maize extracellular 87.29 28.53
TraesCS3B01G255300.1 Wheat cytosol 90.68 28.38
HORVU3Hr1G055920.7 Barley cytosol 87.29 27.61
Os01t0512800-00 Rice cytosol 51.69 26.41
GSMUA_Achr7P10850_001 Banana cytosol 79.66 25.61
VIT_16s0050g01510.t01 Wine grape cytosol 77.97 25.48
TraesCS3D01G227500.3 Wheat golgi 90.68 25.3
Bra019295.1-P Field mustard cytosol 72.88 25.07
CDY10946 Canola cytosol 72.88 25.0
CDX94203 Canola cytosol 72.03 24.71
Solyc03g007670.2.1 Tomato cytosol, extracellular 77.12 24.59
PGSC0003DMT400053839 Potato cytosol, mitochondrion 77.12 24.59
KRH08815 Soybean nucleus 74.58 24.51
KRH38332 Soybean cytosol, nucleus 73.73 24.23
Bra013710.1-P Field mustard cytosol 66.1 24.22
AT4G23570.3 Thale cress cytosol 71.19 23.93
KRH77588 Soybean cytosol 72.88 23.82
KRH35228 Soybean cytosol 72.03 23.81
GSMUA_Achr7P14290_001 Banana cytosol 74.58 23.78
AT4G11260.1 Thale cress cytosol 72.03 23.74
Bra035239.1-P Field mustard cytosol 71.19 23.66
CDY13243 Canola cytosol 71.19 23.6
CDX86798 Canola cytosol 71.19 23.53
CDX90794 Canola cytosol 71.19 23.4
CDY05137 Canola cytosol 71.19 23.4
Bra000741.1-P Field mustard cytosol 70.34 23.18
GSMUA_Achr4P15560_001 Banana cytosol 72.03 23.04
CDY10894 Canola cytosol 68.64 22.82
PGSC0003DMT400074364 Potato cytosol 71.19 22.64
CDY44117 Canola cytosol 67.8 22.41
KRH27885 Soybean cytosol 69.49 21.93
VIT_12s0035g01560.t01 Wine grape cytosol, plasma membrane, vacuole 46.61 21.74
CDY63435 Canola cytosol, mitochondrion, nucleus 52.54 21.09
VIT_02s0025g00450.t01 Wine grape cytosol 28.81 10.06
CDY71639 Canola cytosol, plastid 8.47 8.4
Solyc06g036410.1.1 Tomato cytosol 0.0 0.0
Protein Annotations
MapMan:19.1.6.3UniProt:A0A0P0V5J2ProteinID:BAS73242.1ncoils:CoilGO:GO:0003674GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737
GO:GO:0006950GO:GO:0006952GO:GO:0008150GO:GO:0009605GO:GO:0009607GO:GO:0042742
GO:GO:0050832InterPro:HSP20-like_chaperoneInterPro:IPR007699InterPro:IPR008978EnsemblPlantsGene:Os01g0624500EnsemblPlants:Os01t0624500-01
PFAM:PF05002PFscan:PS51048PANTHER:PTHR22904PANTHER:PTHR22904:SF496InterPro:SGS_domSUPFAM:SSF49764
UniParc:UPI0003938E69SEG:seg::::
Description
suppressor of the G2 allele of skp1Similar to Sgt1. (Os01t0624500-01)
Coordinates
chr1:+:24941444..24942799
Molecular Weight (calculated)
13577.9 Da
IEP (calculated)
5.387
GRAVY (calculated)
-1.161
Length
118 amino acids
Sequence
(BLAST)
001: WTSLDYDKKP KAVPQKIIPP AESAQRPSYP SSKSKKDWDK LEAEVKKEEK EEKLEGDAAL NKFFRDIYSD ADEDMRRAMM KSFVESNGTV LSTNWKDVGS
101: KKVEGSPPDG MELKKWEY
Best Arabidopsis Sequence Match ( AT4G23570.3 )
(BLAST)
001: MAKELADKAK EAFVDDDFDV AVDLYSKAID LDPNCAEFFA DRAQAYIKLE SFTAEAVADA NKAIELDPSL TKAYLRKGTA CMKLEEYRTA KTALEKGASI
101: TPSESKFKKL IDECNFLITE EEKDLVQPVP STLPSSVTAP PVSELDVTPT AKYRHEYYQK PEEVVVTVFA KGIPKQNVNI DFGEQILSVV IEVPGEDAYY
201: LQPRLFGKII PDKCKYEVLS TKIEICLAKA DIITWASLEH GKGPAVLPKP NVSSEVSQRP AYPSSKKVKD WDKLEAEVKK QEKDEKLEGD AALNKFFREI
301: YQNADEDMRR AMSKSFVESN GTVLSTNWQE VGTKTIESTP PDGMELKKWE I
Arabidopsis Description
SGT1Aphosphatase-related [Source:TAIR;Acc:AT4G23570]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.