Factsheet for Os02t0535400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

cytosol: 18257679
nucleus: 18257679

gfp PMID: 18257679 doi

Y Wang, M Gao, Q Li, L Wang, J Wang, JS Jeon, N Qu, Y Zhang, Z He

Institute of Plant Physiology & Ecology, Chinese Academy of Sciences, Shangai, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0624500-01
Os04t0107900-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51700.1	Os01t0624500-01	AT4G11260.1	18065690
AT5G51700.1	Os04t0107900-02	AT5G52640.1	18065690

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050655_P001	Maize	nucleus	41.44	80.65
KXG30344	Sorghum	nucleus	82.87	66.37
TraesCS2A01G414300.2	Wheat	cytosol	80.11	62.77
TraesCS2B01G433400.1	Wheat	cytosol	79.56	62.34
TraesCS2D01G411600.1	Wheat	cytosol	79.56	61.8
PGSC0003DMT400070430	Potato	nucleus	44.2	60.15
GSMUA_AchrUn_...	Banana	nucleus	66.85	56.54
VIT_16s0022g02040.t01	Wine grape	nucleus	63.54	52.75
AT5G51700.1	Thale cress	nucleus	65.75	52.65
CDX91605	Canola	nucleus	65.19	51.98
Bra022561.1-P	Field mustard	nucleus	64.64	51.54
CDY46930	Canola	nucleus	64.64	51.54
CDY00493	Canola	nucleus	65.19	51.3
Bra028270.1-P	Field mustard	nucleus	65.19	51.3
Solyc11g072290.1.1	Tomato	nucleus	63.54	50.88
HORVU2Hr1G097800.8	Barley	cytosol, nucleus, plastid	79.56	50.88
KRH35422	Soybean	nucleus	61.88	50.0
KRG91395	Soybean	nucleus	60.77	49.11

Protein Annotations

MapMan:26.8.2.5	UniProt:A0A0P0VJX6	ProteinID:BAS79059.1	InterPro:CHORD_dom	GO:GO:0002679	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006950	GO:GO:0006952	GO:GO:0008150	GO:GO:0008152	GO:GO:0008219
GO:GO:0008270	GO:GO:0009605	GO:GO:0009607	GO:GO:0009626	GO:GO:0009816	GO:GO:0009817
GO:GO:0009987	GO:GO:0017048	GO:GO:0042742	GO:GO:0046872	GO:GO:0050821	GO:GO:0050832
GO:GO:0051879	InterPro:IPR007051	EnsemblPlantsGene:Os02g0535400	EnsemblPlants:Os02t0535400-01	PFAM:PF04968	PFscan:PS51401
PANTHER:PTHR12621	PANTHER:PTHR12621:SF9	UniParc:UPI00003CE4FB	SEG:seg	:	:

Description

RAR1, Os RAR1Cys- and His-rich domain (CHORD, zinc binding finger motif) containing protein, Innate-immune response (Os02t0535400-01)

Coordinates

chr2:-:19727120..19729886

Molecular Weight (calculated)

20161.0 Da

IEP (calculated)

8.684

GRAVY (calculated)

-0.799

Length

181 amino acids

Sequence
(BLAST)

001: MFHDGMKQWS CCKQKSHDFS LFLAIPGCKT GKHTTEKPIT KAVPTKPSKA VPVQTSKQSV GADTCSRCRQ GFFCSDHGSQ PKAQIPTATS DTNMVPVEKP
101: AVPPPKKKID LNEPRVCKNK GCGKTYKEKD NHDEACDYHP GPAVFRDRIR GWKCCDIHVK EFDEFMEIPP CTKGWHNADA A

Best Arabidopsis Sequence Match ( AT5G51700.1 )
(BLAST)

001: MEVGSATKKL QCQRIGCNAM FTDDDNPQGS CQFHASGPFF HDGMKEWSCC KQRSHDFSLF LEIPGCKTGK HTTEKPVLAK SVPKHPVAAP TSSPDANAAT
101: KDSCSRCRQG FFCSDHGSQP KEQIKQTLNT PGQAEEEKIE PLAPPVQKAV IDINQPQVCK NKGCGQTFKE RDNHETACSH HPGPAVFHDR LRGWKCCDVH
201: VKEFDEFMEI PPCTKGWHSS SPDPAV

Arabidopsis Description

RAR1Cysteine and histidine-rich domain-containing protein RAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SE33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.