Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000741.1-P | |
| Bra003119.1-P | |
| Bra035239.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G51700.1 | Bra000741.1-P | AT4G11260.1 | 18065690 |
| AT5G51700.1 | Bra035239.1-P | AT4G11260.1 | 18065690 |
| AT5G51700.1 | Bra003119.1-P | AT5G52640.1 | 18065690 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00493 | Canola | nucleus | 99.13 | 99.13 |
| Bra022561.1-P | Field mustard | nucleus | 85.65 | 86.78 |
| AT5G51700.1 | Thale cress | nucleus | 78.7 | 80.09 |
| Zm00001d050655_P001 | Maize | nucleus | 26.96 | 66.67 |
| VIT_16s0022g02040.t01 | Wine grape | nucleus | 62.61 | 66.06 |
| GSMUA_AchrUn_... | Banana | nucleus | 61.3 | 65.89 |
| Os02t0535400-01 | Rice | cytosol, nucleus | 51.3 | 65.19 |
| KRH35422 | Soybean | nucleus | 60.87 | 62.5 |
| Solyc11g072290.1.1 | Tomato | nucleus | 60.87 | 61.95 |
| KXG30344 | Sorghum | nucleus | 60.0 | 61.06 |
| PGSC0003DMT400070430 | Potato | nucleus | 35.22 | 60.9 |
| KRG91395 | Soybean | nucleus | 59.13 | 60.71 |
| TraesCS2B01G433400.1 | Wheat | cytosol | 60.43 | 60.17 |
| TraesCS2A01G414300.2 | Wheat | cytosol | 60.0 | 59.74 |
| TraesCS2D01G411600.1 | Wheat | cytosol | 60.43 | 59.66 |
| HORVU2Hr1G097800.8 | Barley | cytosol, nucleus, plastid | 60.43 | 49.12 |
Protein Annotations
Description
AT5G51700 (E=1e-108) PBS2, ATRAR1, RPR2, RAR1 | PBS2 (PPHB SUSCEPTIBLE 2); protein binding / zinc ion binding
Coordinates
chrA01:+:19115375..19116885
Molecular Weight (calculated)
25487.1 Da
IEP (calculated)
7.184
GRAVY (calculated)
-0.658
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVGSATKLQ CQRIGCNAMF TDDDNPDGSC QFHASPFFHD GMKEWSCCKQ RSHDFTLFLE IPGCKKGKHT TEKPVLAKPA PRQPPITVPT SSPVANAAAT
101: LKDSCSRCRQ GFFCSDHGSQ PKGQIRQDLS TPVVQAQEED IETLAPPPPV KKVVIDINQP QVCKNKGCDK TFKEKDNHET ACSYHPGPAV FHDRLRGWKC
201: CDVHVKEFDE FMEIPPCSKG WHSSSADQAV
101: LKDSCSRCRQ GFFCSDHGSQ PKGQIRQDLS TPVVQAQEED IETLAPPPPV KKVVIDINQP QVCKNKGCDK TFKEKDNHET ACSYHPGPAV FHDRLRGWKC
201: CDVHVKEFDE FMEIPPCSKG WHSSSADQAV
001: MEVGSATKKL QCQRIGCNAM FTDDDNPQGS CQFHASGPFF HDGMKEWSCC KQRSHDFSLF LEIPGCKTGK HTTEKPVLAK SVPKHPVAAP TSSPDANAAT
101: KDSCSRCRQG FFCSDHGSQP KEQIKQTLNT PGQAEEEKIE PLAPPVQKAV IDINQPQVCK NKGCGQTFKE RDNHETACSH HPGPAVFHDR LRGWKCCDVH
201: VKEFDEFMEI PPCTKGWHSS SPDPAV
101: KDSCSRCRQG FFCSDHGSQP KEQIKQTLNT PGQAEEEKIE PLAPPVQKAV IDINQPQVCK NKGCGQTFKE RDNHETACSH HPGPAVFHDR LRGWKCCDVH
201: VKEFDEFMEI PPCTKGWHSS SPDPAV
Arabidopsis Description
RAR1Cysteine and histidine-rich domain-containing protein RAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SE33]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.