Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH35422 | Soybean | nucleus | 93.75 | 93.75 |
| Zm00001d050655_P001 | Maize | nucleus | 28.12 | 67.74 |
| VIT_16s0022g02040.t01 | Wine grape | nucleus | 65.62 | 67.43 |
| GSMUA_AchrUn_... | Banana | nucleus | 64.29 | 67.29 |
| PGSC0003DMT400070430 | Potato | nucleus | 36.61 | 61.65 |
| Solyc11g072290.1.1 | Tomato | nucleus | 61.61 | 61.06 |
| Bra022561.1-P | Field mustard | nucleus | 61.61 | 60.79 |
| CDY46930 | Canola | nucleus | 61.61 | 60.79 |
| CDX91605 | Canola | nucleus | 61.61 | 60.79 |
| Os02t0535400-01 | Rice | cytosol, nucleus | 49.11 | 60.77 |
| KXG30344 | Sorghum | nucleus | 61.16 | 60.62 |
| AT5G51700.1 | Thale cress | nucleus | 61.16 | 60.62 |
| TraesCS2A01G414300.2 | Wheat | cytosol | 62.05 | 60.17 |
| TraesCS2B01G433400.1 | Wheat | cytosol | 61.61 | 59.74 |
| TraesCS2D01G411600.1 | Wheat | cytosol | 61.61 | 59.23 |
| CDY00493 | Canola | nucleus | 60.71 | 59.13 |
| Bra028270.1-P | Field mustard | nucleus | 60.71 | 59.13 |
| HORVU2Hr1G097800.8 | Barley | cytosol, nucleus, plastid | 62.5 | 49.47 |
Protein Annotations
| EMBL:ACUP02012682 | EMBL:BT096108 | EMBL:FJ969427 | EnsemblPlants:KRG91395 | EnsemblPlantsGene:GLYMA_20G151900 | EntrezGene:100819671 |
| InterPro:CHORD_dom | InterPro:IPR007051 | PANTHER:PTHR12621 | PANTHER:PTHR12621:SF9 | PFAM:PF04968 | PFscan:PS51401 |
| ProteinID:KRG91395 | ProteinID:KRG91395.1 | UniParc:UPI0001B16DBA | UniProt:C6TET2 | MapMan:26.8.2.5 | : |
Description
hypothetical protein
Coordinates
chr20:-:39074392..39079535
Molecular Weight (calculated)
24625.9 Da
IEP (calculated)
8.059
GRAVY (calculated)
-0.738
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKTAVKVRC QRIGCDAMFS EADNPDGSCR YHDSGPIFHD GTKEWSCCKK RSHDFSLFLE IPGCKTGKHT TVKQVITPVK KNTMPSPTAV SSTNASSKES
101: CPRCRQGFFC SNHGSQSKPV NVVGDKAANL AGDVSADNNS SVEAPKPKKI VDINEAQVCK NKGCGQTFKE KDNHDTACNY HPGPAVFHDR MRGWKCCDIH
201: VKEFDEFMSI PPCAKGWHNA DPES
101: CPRCRQGFFC SNHGSQSKPV NVVGDKAANL AGDVSADNNS SVEAPKPKKI VDINEAQVCK NKGCGQTFKE KDNHDTACNY HPGPAVFHDR MRGWKCCDIH
201: VKEFDEFMSI PPCAKGWHNA DPES
001: MEVGSATKKL QCQRIGCNAM FTDDDNPQGS CQFHASGPFF HDGMKEWSCC KQRSHDFSLF LEIPGCKTGK HTTEKPVLAK SVPKHPVAAP TSSPDANAAT
101: KDSCSRCRQG FFCSDHGSQP KEQIKQTLNT PGQAEEEKIE PLAPPVQKAV IDINQPQVCK NKGCGQTFKE RDNHETACSH HPGPAVFHDR LRGWKCCDVH
201: VKEFDEFMEI PPCTKGWHSS SPDPAV
101: KDSCSRCRQG FFCSDHGSQP KEQIKQTLNT PGQAEEEKIE PLAPPVQKAV IDINQPQVCK NKGCGQTFKE RDNHETACSH HPGPAVFHDR LRGWKCCDVH
201: VKEFDEFMEI PPCTKGWHSS SPDPAV
Arabidopsis Description
RAR1Cysteine and histidine-rich domain-containing protein RAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SE33]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.