Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000741.1-P | |
| Bra003119.1-P | |
| Bra035239.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G51700.1 | Bra000741.1-P | AT4G11260.1 | 18065690 |
| AT5G51700.1 | Bra035239.1-P | AT4G11260.1 | 18065690 |
| AT5G51700.1 | Bra003119.1-P | AT5G52640.1 | 18065690 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46930 | Canola | nucleus | 100.0 | 100.0 |
| Bra028270.1-P | Field mustard | nucleus | 86.78 | 85.65 |
| AT5G51700.1 | Thale cress | nucleus | 79.3 | 79.65 |
| GSMUA_AchrUn_... | Banana | nucleus | 63.0 | 66.82 |
| Zm00001d050655_P001 | Maize | nucleus | 27.31 | 66.67 |
| VIT_16s0022g02040.t01 | Wine grape | nucleus | 63.88 | 66.51 |
| Os02t0535400-01 | Rice | cytosol, nucleus | 51.54 | 64.64 |
| PGSC0003DMT400070430 | Potato | nucleus | 37.44 | 63.91 |
| KRH35422 | Soybean | nucleus | 62.56 | 63.39 |
| Solyc11g072290.1.1 | Tomato | nucleus | 63.0 | 63.27 |
| KRG91395 | Soybean | nucleus | 60.79 | 61.61 |
| TraesCS2B01G433400.1 | Wheat | cytosol | 61.67 | 60.61 |
| KXG30344 | Sorghum | nucleus | 59.91 | 60.18 |
| TraesCS2A01G414300.2 | Wheat | cytosol | 61.23 | 60.17 |
| TraesCS2D01G411600.1 | Wheat | cytosol | 61.67 | 60.09 |
| HORVU2Hr1G097800.8 | Barley | cytosol, nucleus, plastid | 62.11 | 49.82 |
Protein Annotations
Description
AT5G51700 (E=5e-116) PBS2, ATRAR1, RPR2, RAR1 | PBS2 (PPHB SUSCEPTIBLE 2); protein binding / zinc ion binding
Coordinates
chrA02:+:8928927..8930375
Molecular Weight (calculated)
25209.6 Da
IEP (calculated)
7.931
GRAVY (calculated)
-0.750
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVRSATKLQ CQRIGCNAMF TDDDNPDGSC RFHASPFFHD GMKEWSCCKQ RSHDFTLFLE IPGCKTGKHT TEKPVLAKPA PRQPVTVPTS SPHGNAATKD
101: SCSRCRQGFF CSDHGSQPKE QTSQQALNTP VQVQGEKTES LAPAPVKKVV IDINQPQVCK NKGCGKTFKE RDNHETACSY HPGPAVFHDR LRGWKCCDVH
201: VKEFDEFMEI PPCTKGWHSS SSADQAV
101: SCSRCRQGFF CSDHGSQPKE QTSQQALNTP VQVQGEKTES LAPAPVKKVV IDINQPQVCK NKGCGKTFKE RDNHETACSY HPGPAVFHDR LRGWKCCDVH
201: VKEFDEFMEI PPCTKGWHSS SSADQAV
001: MEVGSATKKL QCQRIGCNAM FTDDDNPQGS CQFHASGPFF HDGMKEWSCC KQRSHDFSLF LEIPGCKTGK HTTEKPVLAK SVPKHPVAAP TSSPDANAAT
101: KDSCSRCRQG FFCSDHGSQP KEQIKQTLNT PGQAEEEKIE PLAPPVQKAV IDINQPQVCK NKGCGQTFKE RDNHETACSH HPGPAVFHDR LRGWKCCDVH
201: VKEFDEFMEI PPCTKGWHSS SPDPAV
101: KDSCSRCRQG FFCSDHGSQP KEQIKQTLNT PGQAEEEKIE PLAPPVQKAV IDINQPQVCK NKGCGQTFKE RDNHETACSH HPGPAVFHDR LRGWKCCDVH
201: VKEFDEFMEI PPCTKGWHSS SPDPAV
Arabidopsis Description
RAR1Cysteine and histidine-rich domain-containing protein RAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SE33]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.