Factsheet for Solyc11g072290.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g007670.2.1
Solyc03g007890.2.1
Solyc06g036410.1.1
Solyc06g036420.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51700.1	Solyc03g007670.2.1	AT4G11260.1	18065690
AT5G51700.1	Solyc06g036410.1.1	AT4G11260.1	18065690
AT5G51700.1	Solyc06g036420.1.1	AT4G11260.1	18065690
AT5G51700.1	Solyc03g007890.2.1	AT5G52640.1	18065690

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070430	Potato	nucleus	54.42	92.48
Zm00001d050655_P001	Maize	nucleus	27.43	66.67
CDX91605	Canola	nucleus	64.6	64.32
GSMUA_AchrUn_...	Banana	nucleus	60.62	64.02
Os02t0535400-01	Rice	cytosol, nucleus	50.88	63.54
Bra022561.1-P	Field mustard	nucleus	63.27	63.0
CDY46930	Canola	nucleus	63.27	63.0
AT5G51700.1	Thale cress	nucleus	62.83	62.83
VIT_16s0022g02040.t01	Wine grape	nucleus	59.73	61.93
KRG91395	Soybean	nucleus	61.06	61.61
KRH35422	Soybean	nucleus	60.62	61.16
KXG30344	Sorghum	nucleus	61.06	61.06
CDY00493	Canola	nucleus	61.95	60.87
Bra028270.1-P	Field mustard	nucleus	61.95	60.87
TraesCS2B01G433400.1	Wheat	cytosol	61.5	60.17
TraesCS2A01G414300.2	Wheat	cytosol	61.06	59.74
TraesCS2D01G411600.1	Wheat	cytosol	61.5	59.66
HORVU2Hr1G097800.8	Barley	cytosol, nucleus, plastid	61.5	49.12

Protein Annotations

MapMan:26.8.2.5	InterPro:CHORD_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006950	GO:GO:0008150
GO:GO:0009605	GO:GO:0009607	GO:GO:0017048	GO:GO:0042742	GO:GO:0050832	GO:GO:0051879
InterPro:IPR007051	UniProt:K4DAT6	PFAM:PF04968	PFscan:PS51401	PANTHER:PTHR12621	PANTHER:PTHR12621:SF9
EnsemblPlantsGene:Solyc11g072290.1	EnsemblPlants:Solyc11g072290.1.1	UniParc:UPI0002769B22	SEG:seg	:	:

Description

No Description!

Coordinates

chr11:-:55482720..55487691

Molecular Weight (calculated)

25249.9 Da

IEP (calculated)

8.069

GRAVY (calculated)

-0.760

Length

226 amino acids

Sequence
(BLAST)

001: MERLRCQRIG CNATFTEDDN PEGSCTYHES IHPLFHDGMK QWSCCKKKSH DFSLFLEIPG CKTGKHTTEK PVIATPSATK NKAVPVPVRV PAPMTNASPK
101: EACSRCHQGF FCSDHGSRPR EAIPKASNTV TSLPSESNTV VQQDHPAPVK KKIDINEPQI CKNKSCGKTF TEKENHDTAC NYHPGPAIFH DRMKGWKCCD
201: VHVKEFDEFM TIPPCTKGWH NSDPVS

Best Arabidopsis Sequence Match ( AT5G51700.1 )
(BLAST)

001: MEVGSATKKL QCQRIGCNAM FTDDDNPQGS CQFHASGPFF HDGMKEWSCC KQRSHDFSLF LEIPGCKTGK HTTEKPVLAK SVPKHPVAAP TSSPDANAAT
101: KDSCSRCRQG FFCSDHGSQP KEQIKQTLNT PGQAEEEKIE PLAPPVQKAV IDINQPQVCK NKGCGQTFKE RDNHETACSH HPGPAVFHDR LRGWKCCDVH
201: VKEFDEFMEI PPCTKGWHSS SPDPAV

Arabidopsis Description

RAR1Cysteine and histidine-rich domain-containing protein RAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SE33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.