Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G433400.1 | Wheat | cytosol | 98.27 | 98.27 |
| TraesCS2D01G411600.1 | Wheat | cytosol | 95.67 | 94.85 |
| KXG30344 | Sorghum | nucleus | 80.09 | 81.86 |
| Zm00001d050655_P001 | Maize | nucleus | 32.9 | 81.72 |
| Os02t0535400-01 | Rice | cytosol, nucleus | 62.77 | 80.11 |
| HORVU2Hr1G097800.8 | Barley | cytosol, nucleus, plastid | 94.81 | 77.39 |
| GSMUA_AchrUn_... | Banana | nucleus | 65.8 | 71.03 |
| AT5G51700.1 | Thale cress | nucleus | 61.04 | 62.39 |
| VIT_16s0022g02040.t01 | Wine grape | nucleus | 58.87 | 62.39 |
| KRG91395 | Soybean | nucleus | 60.17 | 62.05 |
| CDX91605 | Canola | nucleus | 60.61 | 61.67 |
| KRH35422 | Soybean | nucleus | 59.74 | 61.61 |
| CDY46930 | Canola | nucleus | 60.17 | 61.23 |
| Bra022561.1-P | Field mustard | nucleus | 60.17 | 61.23 |
| Solyc11g072290.1.1 | Tomato | nucleus | 59.74 | 61.06 |
| CDY00493 | Canola | nucleus | 59.74 | 60.0 |
| Bra028270.1-P | Field mustard | nucleus | 59.74 | 60.0 |
| PGSC0003DMT400070430 | Potato | nucleus | 33.77 | 58.65 |
Protein Annotations
| MapMan:26.8.2.5 | InterPro:CHORD_dom | GO:GO:0002679 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008219 | GO:GO:0008270 | GO:GO:0009605 |
| GO:GO:0009607 | GO:GO:0009626 | GO:GO:0009816 | GO:GO:0009817 | GO:GO:0009987 | GO:GO:0042742 |
| GO:GO:0050821 | GO:GO:0051879 | InterPro:IPR007051 | PFAM:PF04968 | PFscan:PS51401 | PANTHER:PTHR12621 |
| PANTHER:PTHR12621:SF9 | EnsemblPlantsGene:TraesCS2A01G414300 | EnsemblPlants:TraesCS2A01G414300.2 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2A:+:671336191..671341272
Molecular Weight (calculated)
25377.9 Da
IEP (calculated)
7.753
GRAVY (calculated)
-0.764
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAETETSAA APAPAPMRCQ RIGCDAMFTD DDNPDGSCHY HPSGPMFHDG MKEWSCCKQR SHDFSLFLAI PGCATGKHTT EKPVTKAVSL NSKATPPKLA
101: PIQSSKQGVE TEACSRCRQG FFCSDHGSQP KAQKPVAVNG TNTEPVEKCS VPQPRKKVVN INEPRVCKNK GCGKTYKEKD NHDAACEYHP GPAVFHDRNR
201: GWKCCDIHVK EFDEFMEIPP CTKGWHNADA V
101: PIQSSKQGVE TEACSRCRQG FFCSDHGSQP KAQKPVAVNG TNTEPVEKCS VPQPRKKVVN INEPRVCKNK GCGKTYKEKD NHDAACEYHP GPAVFHDRNR
201: GWKCCDIHVK EFDEFMEIPP CTKGWHNADA V
001: MEVGSATKKL QCQRIGCNAM FTDDDNPQGS CQFHASGPFF HDGMKEWSCC KQRSHDFSLF LEIPGCKTGK HTTEKPVLAK SVPKHPVAAP TSSPDANAAT
101: KDSCSRCRQG FFCSDHGSQP KEQIKQTLNT PGQAEEEKIE PLAPPVQKAV IDINQPQVCK NKGCGQTFKE RDNHETACSH HPGPAVFHDR LRGWKCCDVH
201: VKEFDEFMEI PPCTKGWHSS SPDPAV
101: KDSCSRCRQG FFCSDHGSQP KEQIKQTLNT PGQAEEEKIE PLAPPVQKAV IDINQPQVCK NKGCGQTFKE RDNHETACSH HPGPAVFHDR LRGWKCCDVH
201: VKEFDEFMEI PPCTKGWHSS SPDPAV
Arabidopsis Description
RAR1Cysteine and histidine-rich domain-containing protein RAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SE33]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.