Factsheet for PGSC0003DMT400053839

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400024594
PGSC0003DMT400070430

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11260.1	PGSC0003DMT400070430	AT5G51700.1	11847307
AT4G11260.1	PGSC0003DMT400070430	AT5G51700.1	18065690
AT4G11260.1	PGSC0003DMT400024594	AT5G52640.1	18065690

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g007670.2.1	Tomato	cytosol, extracellular	97.03	97.03
Os01t0624500-01	Rice	cytosol, nucleus	24.59	77.12
VIT_16s0050g01510.t01	Wine grape	cytosol	71.62	73.41
PGSC0003DMT400074364	Potato	cytosol	73.24	73.05
KRH38332	Soybean	cytosol, nucleus	68.92	71.03
KRH08815	Soybean	nucleus	68.38	70.47
Bra019295.1-P	Field mustard	cytosol	62.97	67.93
CDX94203	Canola	cytosol	62.97	67.73
CDY10946	Canola	cytosol	62.97	67.73
Zm00001d044172_P002	Maize	extracellular	65.41	67.04
EES01101	Sorghum	cytosol	65.95	67.03
GSMUA_Achr7P10850_001	Banana	cytosol	66.22	66.76
KRH35228	Soybean	cytosol	64.32	66.67
Bra035239.1-P	Field mustard	cytosol	63.24	65.92
AT4G23570.3	Thale cress	cytosol	62.43	65.81
CDX90794	Canola	cytosol	63.78	65.74
CDY13243	Canola	cytosol	63.24	65.73
Zm00001d011401_P001	Maize	extracellular	64.05	65.65
AT4G11260.1	Thale cress	cytosol	63.51	65.64
CDX86798	Canola	cytosol	63.24	65.55
HORVU3Hr1G055920.7	Barley	cytosol	65.68	65.15
Bra000741.1-P	Field mustard	cytosol	62.97	65.08
CDY05137	Canola	cytosol	62.97	64.9
Bra013710.1-P	Field mustard	cytosol	55.95	64.29
CDY10894	Canola	cytosol	61.62	64.23
GSMUA_Achr4P15560_001	Banana	cytosol	63.51	63.69
CDY44117	Canola	cytosol	61.08	63.31
CDY43481	Canola	cytosol	11.89	62.86
CDY28656	Canola	cytosol	11.89	62.86
TraesCS3B01G255300.1	Wheat	cytosol	62.7	61.54
CDY10892	Canola	endoplasmic reticulum, golgi	31.35	61.38
GSMUA_Achr7P14290_001	Banana	cytosol	60.54	60.54
TraesCS3D01G227500.3	Wheat	golgi	66.76	58.39
CDY44118	Canola	endoplasmic reticulum, plastid, vacuole	33.24	55.91
KRG94038	Soybean	cytosol, mitochondrion, nucleus	9.46	47.95
Bra019498.1-P	Field mustard	cytosol, plastid	28.38	47.51
CDY63435	Canola	cytosol, mitochondrion, nucleus	36.76	46.26
CDY71639	Canola	cytosol, plastid	12.16	37.82
VIT_12s0035g01560.t01	Wine grape	cytosol, plasma membrane, vacuole	20.54	30.04

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102599444	MapMan:19.1.6.3	Gene3D:2.60.40.790	ProteinID:AAU04979	ProteinID:AAU04979.1
ProteinID:AAU21291	ProteinID:AAU21291.1	EMBL:AY615272	EMBL:AY615274	InterPro:CS_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:HSP20-like_chaperone	InterPro:IPR007052	InterPro:IPR007699	InterPro:IPR008978
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M1BVI5	PFAM:PF04969	PFAM:PF05002
PFAM:PF13181	EnsemblPlantsGene:PGSC0003DMG400020884	PGSC:PGSC0003DMG400020884	EnsemblPlants:PGSC0003DMT400053839	PFscan:PS50293	PFscan:PS51048
PFscan:PS51203	PANTHER:PTHR22904	PANTHER:PTHR22904:SF496	InterPro:SGS_dom	SMART:SM00028	SUPFAM:SSF48452
SUPFAM:SSF49764	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000296F3E6	RefSeq:XP_006362653.1
SEG:seg	:	:	:	:	:

Description

SGT1 [Source:PGSC_GENE;Acc:PGSC0003DMG400020884]

Coordinates

chr3:-:49488325..49493314

Molecular Weight (calculated)

41115.7 Da

IEP (calculated)

4.786

GRAVY (calculated)

-0.457

Length

370 amino acids

Sequence
(BLAST)

001: MASDLETRAK EAFIDDHFEL AVDLYTQAIT MSPKNPELFA DRAQANIKLN YFTEAVVDAN KAIELDPTMS KAYLRKGLAC MKLEEYQTAK AALETGASLA
101: PGELRFTKLI KECDERIAEE AGELPNLSVD KTSASVVAPP ASELSDNVAI APEGAQPTVN QSHQGSAAKP KYRHEFYQKP EEVVVTIFAK GIPAKNVVVD
201: FGEQILSVSI DVPGEETYSF QPRLFGKITP ANCRYEVMST KIEIRLAKAE PLHWTSLEYT TEPVVVQRPI VSSAAPRPSY PSSKLRNVDW DKLEAAVKKE
301: EKDEKLDGDA ALNKFFRDIY QDADEDTRRA MMKSFVESNG TVLSTNWKEV GTKKVEGSPP DGMELKKWEI

Best Arabidopsis Sequence Match ( AT4G11260.1 )
(BLAST)

001: MAKELAEKAK EAFLDDDFDV AVDLYSKAID LDPNCAAFFA DRAQANIKID NFTEAVVDAN KAIELEPTLA KAYLRKGTAC MKLEEYSTAK AALEKGASVA
101: PNEPKFKKMI DECDLRIAEE EKDLVQPMPP SLPSSSTTPL ATEADAPPVP IPAAPAKPMF RHEFYQKPEE AVVTIFAKKV PKENVTVEFG EQILSVVIDV
201: AGEEAYHLQP RLFGKIIPEK CRFEVLSTKV EIRLAKAEII TWASLEYGKG QSVLPKPNVS SALSQRPVYP SSKPAKDWDK LEAEVKKQEK DEKLDGDAAM
301: NKFFSDIYSS ADEDMRRAMN KSFAESNGTV LSTNWKEVGT KKVESTPPDG MELKKWEY

Arabidopsis Description

SGT1BSGT1B [Source:UniProtKB/TrEMBL;Acc:A0A178UX37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.