CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44118	Canola	endoplasmic reticulum, plastid, vacuole	85.19	73.18
CDY28656	Canola	cytosol	25.93	70.0
CDY43481	Canola	cytosol	25.93	70.0
Os01t0624500-01	Rice	cytosol, nucleus	40.74	65.25
CDY10894	Canola	cytosol	81.48	43.38
CDY44117	Canola	cytosol	80.95	42.86
KRG94038	Soybean	cytosol, mitochondrion, nucleus	16.4	42.47
CDY10946	Canola	cytosol	77.25	42.44
CDX94203	Canola	cytosol	76.19	41.86
CDY71639	Canola	cytosol, plastid	25.93	41.18
AT4G23570.3	Thale cress	cytosol	74.6	40.17
CDY13243	Canola	cytosol	69.31	36.8
CDX90794	Canola	cytosol	69.84	36.77
CDY05137	Canola	cytosol	69.84	36.77
CDX86798	Canola	cytosol	68.78	36.41
Solyc06g036420.1.1	Tomato	cytosol	56.61	36.15
KRH08815	Soybean	nucleus	61.9	32.59
VIT_16s0050g01510.t01	Wine grape	cytosol	61.9	32.41
Zm00001d011401_P001	Maize	extracellular	61.38	32.13
Solyc03g007670.2.1	Tomato	cytosol, extracellular	62.43	31.89
Zm00001d044172_P002	Maize	extracellular	60.85	31.86
HORVU3Hr1G055920.7	Barley	cytosol	62.43	31.64
KRH77588	Soybean	cytosol	60.32	31.58
PGSC0003DMT400053839	Potato	cytosol, mitochondrion	61.38	31.35
EES01101	Sorghum	cytosol	60.32	31.32
KRH38332	Soybean	cytosol, nucleus	59.26	31.2
TraesCS3B01G255300.1	Wheat	cytosol	61.38	30.77
GSMUA_Achr7P10850_001	Banana	cytosol	58.73	30.25
KRH27885	Soybean	cytosol	59.79	30.21
KRH35228	Soybean	cytosol	56.08	29.69
GSMUA_Achr7P14290_001	Banana	cytosol	57.14	29.19
PGSC0003DMT400074364	Potato	cytosol	55.56	28.3
GSMUA_Achr4P15560_001	Banana	cytosol	54.5	27.91
TraesCS3D01G227500.3	Wheat	golgi	61.38	27.42
CDY63435	Canola	cytosol, mitochondrion, nucleus	40.74	26.19
VIT_12s0035g01560.t01	Wine grape	cytosol, plasma membrane, vacuole	26.98	20.16
VIT_02s0025g00450.t01	Wine grape	cytosol	33.86	18.93
Solyc06g036410.1.1	Tomato	cytosol	2.12	6.06

Protein Annotations

EnsemblPlants:CDY10892	EnsemblPlantsGene:GSBRNA2T00048791001	Gene3D:2.60.40.790	InterPro:CS_dom	InterPro:HSP20-like_chaperone	InterPro:IPR007052
InterPro:IPR007699	InterPro:IPR008978	InterPro:SGS_dom	PANTHER:PTHR22904	PANTHER:PTHR22904:SF496	PFAM:PF04969
PFAM:PF05002	PFscan:PS51048	PFscan:PS51203	ProteinID:CDY10892	ProteinID:CDY10892.1	SEG:seg
SignalP:SignalP-noTM	SUPFAM:SSF49764	UniParc:UPI0004EE3536	UniProt:A0A078FD41	MapMan:19.1.6.3	:

Description

BnaC01g15070DBnaC01g15070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FD41]

Coordinates

chrLK032007:-:678464..679708

Molecular Weight (calculated)

21150.7 Da

IEP (calculated)

9.775

GRAVY (calculated)

-0.279

Length

189 amino acids

Sequence
(BLAST)

001: MLGIKLAVVL ILVIAILRRI SNQLSVVIDV PGEDESYHLQ PRLFGKIVPA KCRYEVLSTK VEIRLAKAEI ITWASLEHGK GLAVLPKPNF LSEVSKRPAY
101: PSSKKVKDWD TFEAEVKKQE KGGKLEGDAA LNKSLREIYS NADEDMRRAM SKSFVESNGT VLSTNWKEVG AKTIESTRPD GVELKKWEI

Best Arabidopsis Sequence Match ( AT4G11260.1 )
(BLAST)

001: MAKELAEKAK EAFLDDDFDV AVDLYSKAID LDPNCAAFFA DRAQANIKID NFTEAVVDAN KAIELEPTLA KAYLRKGTAC MKLEEYSTAK AALEKGASVA
101: PNEPKFKKMI DECDLRIAEE EKDLVQPMPP SLPSSSTTPL ATEADAPPVP IPAAPAKPMF RHEFYQKPEE AVVTIFAKKV PKENVTVEFG EQILSVVIDV
201: AGEEAYHLQP RLFGKIIPEK CRFEVLSTKV EIRLAKAEII TWASLEYGKG QSVLPKPNVS SALSQRPVYP SSKPAKDWDK LEAEVKKQEK DEKLDGDAAM
301: NKFFSDIYSS ADEDMRRAMN KSFAESNGTV LSTNWKEVGT KKVESTPPDG MELKKWEY

Arabidopsis Description

SGT1BSGT1B [Source:UniProtKB/TrEMBL;Acc:A0A178UX37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.