Factsheet for VIT_02s0025g00450.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g00280.t01
VIT_07s0129g00540.t01
VIT_16s0022g02040.t01
VIT_16s0050g01150.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11260.1	VIT_07s0129g00540.t01	AT4G37460.1	21798944
AT4G11260.1	VIT_16s0022g02040.t01	AT5G51700.1	11847307
AT4G11260.1	VIT_16s0022g02040.t01	AT5G51700.1	18065690
AT4G11260.1	VIT_02s0025g00280.t01	AT5G52640.1	18065690
AT4G11260.1	VIT_16s0050g01150.t01	AT5G52640.1	18065690

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0050g01510.t01	Wine grape	cytosol	50.3	47.09
KRH77588	Soybean	cytosol	50.0	46.81
AT4G23570.3	Thale cress	cytosol	47.93	46.15
CDX90794	Canola	cytosol	48.82	45.96
CDX94203	Canola	cytosol	46.45	45.64
CDY10946	Canola	cytosol	46.45	45.64
Bra035239.1-P	Field mustard	cytosol	47.93	45.63
Bra019295.1-P	Field mustard	cytosol	46.15	45.48
CDX86798	Canola	cytosol	47.93	45.38
GSMUA_Achr7P10850_001	Banana	cytosol	49.11	45.23
CDY13243	Canola	cytosol	47.63	45.22
CDY05137	Canola	cytosol	47.93	45.13
Bra000741.1-P	Field mustard	cytosol	47.63	44.97
GSMUA_Achr7P14290_001	Banana	cytosol	49.11	44.86
AT4G11260.1	Thale cress	cytosol	47.04	44.41
KRH27885	Soybean	cytosol	49.11	44.38
CDY10894	Canola	cytosol	46.45	44.23
Zm00001d044172_P002	Maize	extracellular	46.75	43.77
CDY44117	Canola	cytosol	45.86	43.42
Bra013710.1-P	Field mustard	cytosol	41.12	43.17
HORVU3Hr1G055920.7	Barley	cytosol	47.34	42.9
EES01101	Sorghum	cytosol	46.15	42.86
Zm00001d011401_P001	Maize	extracellular	45.56	42.66
GSMUA_Achr4P15560_001	Banana	cytosol	45.27	41.46
TraesCS3B01G255300.1	Wheat	cytosol	43.2	38.73
TraesCS3D01G227500.3	Wheat	golgi	47.34	37.83
CDY10892	Canola	endoplasmic reticulum, golgi	18.93	33.86
CDY44118	Canola	endoplasmic reticulum, plastid, vacuole	21.01	32.27
CDY71639	Canola	cytosol, plastid	10.65	30.25
CDY63435	Canola	cytosol, mitochondrion, nucleus	25.44	29.25
Os01t0624500-01	Rice	cytosol, nucleus	10.06	28.81
Bra019498.1-P	Field mustard	cytosol, plastid	16.57	25.34
CDY28656	Canola	cytosol	4.73	22.86
CDY43481	Canola	cytosol	4.73	22.86
VIT_12s0035g01560.t01	Wine grape	cytosol, plasma membrane, vacuole	14.79	19.76

Protein Annotations

Gene3D:1.25.40.10	MapMan:19.1.6.3	Gene3D:2.60.40.790	ProteinID:CBI34396	ProteinID:CBI34396.3	InterPro:CS_dom
ncoils:Coil	UniProt:D7TV71	EMBL:FN596251	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:HSP20-like_chaperone	InterPro:IPR007052	InterPro:IPR008978	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
PFAM:PF04969	PFAM:PF13181	PFscan:PS50005	PFscan:PS50293	PFscan:PS51203	PANTHER:PTHR22904
PANTHER:PTHR22904:SF496	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF49764	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI0001BE44B0	ArrayExpress:VIT_02s0025g00450	EnsemblPlantsGene:VIT_02s0025g00450	EnsemblPlants:VIT_02s0025g00450.t01	SEG:seg

Description

No Description!

Coordinates

chr2:+:537380..544068

Molecular Weight (calculated)

38103.1 Da

IEP (calculated)

8.638

GRAVY (calculated)

-0.345

Length

338 amino acids

Sequence
(BLAST)

001: MAVELERKAG VAFIDEDYKL AVDLFSKALK IRPNNAELLA SRAQANIMLH DYLEAVGDAI KAIQLDPSMA KAYLRKGIAC FKLEEYQTAK VALEKGVRFA
101: QNDPRFAKLI KECNDCIAEQ YDMKLGCIFL KSWKRVLIIV PSSPSMHTRM SFTKLENASI TVGRGASTAL AKPKYRLHEY YQKPEEVVVT IFAKGIPENN
201: VVVHFAVQTL SVAIEVPGLT PYYLHLRLFG KIIPDNSRYA VMSTKVEIRL AKAEALNWPS LEISDKGTDP KKLQMPSAVD QRPTNPSSKA KVIDWDKLQA
301: QIEEEEKEEE LKDDATRNAD TQRTMNKKTC EPHLSPYP

Best Arabidopsis Sequence Match ( AT4G11260.1 )
(BLAST)

001: MAKELAEKAK EAFLDDDFDV AVDLYSKAID LDPNCAAFFA DRAQANIKID NFTEAVVDAN KAIELEPTLA KAYLRKGTAC MKLEEYSTAK AALEKGASVA
101: PNEPKFKKMI DECDLRIAEE EKDLVQPMPP SLPSSSTTPL ATEADAPPVP IPAAPAKPMF RHEFYQKPEE AVVTIFAKKV PKENVTVEFG EQILSVVIDV
201: AGEEAYHLQP RLFGKIIPEK CRFEVLSTKV EIRLAKAEII TWASLEYGKG QSVLPKPNVS SALSQRPVYP SSKPAKDWDK LEAEVKKQEK DEKLDGDAAM
301: NKFFSDIYSS ADEDMRRAMN KSFAESNGTV LSTNWKEVGT KKVESTPPDG MELKKWEY

Arabidopsis Description

SGT1BSGT1B [Source:UniProtKB/TrEMBL;Acc:A0A178UX37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.