Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g072760.2.1 | Tomato | cytosol | 60.15 | 56.54 |
| CDY38084 | Canola | cytosol | 38.35 | 51.78 |
| PGSC0003DMT400045973 | Potato | cytosol | 22.56 | 44.78 |
| PGSC0003DMT400043211 | Potato | cytosol | 43.98 | 42.86 |
| VIT_16s0039g01850.t01 | Wine grape | cytosol | 44.74 | 42.81 |
| PGSC0003DMT400038357 | Potato | cytosol | 43.61 | 42.49 |
| CDY16976 | Canola | cytosol, plastid | 43.61 | 42.03 |
| Bra008592.1-P | Field mustard | cytosol, plastid | 43.61 | 41.58 |
| CDX69417 | Canola | cytosol, plastid | 43.23 | 41.22 |
| TraesCS3A01G175000.1 | Wheat | cytosol | 42.86 | 41.16 |
| CDX70720 | Canola | cytosol, plastid | 42.48 | 40.94 |
| TraesCS3D01G180500.1 | Wheat | cytosol | 42.48 | 40.79 |
| CDX78712 | Canola | cytosol, plastid | 42.11 | 40.58 |
| Bra006372.1-P | Field mustard | cytosol, plastid | 42.11 | 40.58 |
| HORVU3Hr1G035380.1 | Barley | cytosol | 42.11 | 40.43 |
| EES02705 | Sorghum | cytosol | 42.48 | 40.36 |
| GSMUA_Achr5P04090_001 | Banana | cytosol | 42.11 | 40.14 |
| GSMUA_Achr7P04850_001 | Banana | cytosol | 40.98 | 39.93 |
| AT5G16830.1 | Thale cress | cytosol, plastid | 41.35 | 39.43 |
| Os01t0254900-01 | Rice | plasma membrane | 41.35 | 39.29 |
| GSMUA_Achr4P20770_001 | Banana | cytosol | 39.85 | 38.83 |
| GSMUA_Achr1P15580_001 | Banana | cytosol | 39.1 | 38.1 |
| PGSC0003DMT400068230 | Potato | cytosol | 40.6 | 35.64 |
| Os02t0702800-01 | Rice | cytosol | 34.96 | 34.83 |
| EES05663 | Sorghum | cytosol | 34.96 | 34.7 |
| Zm00001d040286_P003 | Maize | cytosol | 38.35 | 34.11 |
| HORVU6Hr1G068640.1 | Barley | cytosol | 33.46 | 33.46 |
| HORVU6Hr1G041590.1 | Barley | cytosol | 33.46 | 33.46 |
| TraesCS6A01G271000.1 | Wheat | cytosol | 33.46 | 33.09 |
| TraesCS6B01G298100.3 | Wheat | cytosol | 33.46 | 32.13 |
| Zm00001d017756_P001 | Maize | extracellular | 28.57 | 30.65 |
| TraesCS6D01G244100.2 | Wheat | cytosol | 33.46 | 30.48 |
| Zm00001d008333_P003 | Maize | cytosol | 36.09 | 29.54 |
| Zm00001d039536_P001 | Maize | cytosol | 27.07 | 27.38 |
| PGSC0003DMT400084469 | Potato | cytosol, golgi, mitochondrion, nucleus | 4.14 | 17.46 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.2 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 |
| GO:GO:0005770 | GO:GO:0005794 | GO:GO:0006623 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0030140 | GO:GO:0045324 |
| GO:GO:0061025 | InterPro:IPR000727 | UniProt:M1CK56 | PFAM:PF00804 | PFAM:PF05739 | EnsemblPlantsGene:PGSC0003DMG400026936 |
| PGSC:PGSC0003DMG400026936 | EnsemblPlants:PGSC0003DMT400069241 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF138 |
| SMART:SM00397 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | InterPro:T_SNARE_dom |
| UniParc:UPI000295DCB2 | SEG:seg | : | : | : | : |
Description
Syntaxin [Source:PGSC_GENE;Acc:PGSC0003DMG400026936]
Coordinates
chr6:-:53463429..53465623
Molecular Weight (calculated)
29704.1 Da
IEP (calculated)
5.969
GRAVY (calculated)
-0.488
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFEDLESGS SLYVQGGSGS WERQTKQAIT NPSASDNRQS IVVTKKIADA KLAKDFQSVL KKFQNAQQLA AQREAAYTPF ISQEIISSRS TEIQISSSIS
101: PESGSTLLES KRQDVVQLEH EIVFNETIIE EREQGMIEIQ QQIGELNEMF KDLALLVHEQ GTMLDDISSN IESSHDATAQ AAKQLTKASK IQQCNSSMTS
201: GSIHNLHNQK GTTIYFLSST HPPDPNKGKN QLIQQAKKDI TYWLLRLILS DRIQSRKLIS ITIECM
101: PESGSTLLES KRQDVVQLEH EIVFNETIIE EREQGMIEIQ QQIGELNEMF KDLALLVHEQ GTMLDDISSN IESSHDATAQ AAKQLTKASK IQQCNSSMTS
201: GSIHNLHNQK GTTIYFLSST HPPDPNKGKN QLIQQAKKDI TYWLLRLILS DRIQSRKLIS ITIECM
001: MVRSNDVKFQ VYDAELTHFD LESNNNLQYS LSLNLSIRNS KSSIGIHYDR FEATVYYMNQ RLGAVPMPLF YLGSKNTMLL RALFEGQTLV LLKGNERKKF
101: EDDQKTGVYR IDVKLSINFR VMVLHLVTWP MKPVVRCHLK IPLALGSSNS TGGHKKMLLI GQLVKDTSAN LREASETDHR RDVAQSKKIA DAKLAKDFEA
201: ALKEFQKAQH ITVERETSYI PFDPKGSFSS SEVDIGYDRS QEQRVLMESR RQEIVLLDNE ISLNEARIEA REQGIQEVKH QISEVMEMFK DLAVMVDHQG
301: TIDDIDEKID NLRSAAAQGK SHLVKASNTQ GSNSSLMCLC WK
101: EDDQKTGVYR IDVKLSINFR VMVLHLVTWP MKPVVRCHLK IPLALGSSNS TGGHKKMLLI GQLVKDTSAN LREASETDHR RDVAQSKKIA DAKLAKDFEA
201: ALKEFQKAQH ITVERETSYI PFDPKGSFSS SEVDIGYDRS QEQRVLMESR RQEIVLLDNE ISLNEARIEA REQGIQEVKH QISEVMEMFK DLAVMVDHQG
301: TIDDIDEKID NLRSAAAQGK SHLVKASNTQ GSNSSLMCLC WK
Arabidopsis Description
SYP24Putative syntaxin-24 [Source:UniProtKB/Swiss-Prot;Acc:Q9C615]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.