Factsheet for Bra008592.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
vacuole 2
mitochondrion 1
cytosol 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69417	Canola	cytosol, plastid	97.85	97.85
Bra006372.1-P	Field mustard	cytosol, plastid	88.89	89.86
VIT_16s0039g01850.t01	Wine grape	cytosol	65.23	65.47
Bra040178.1-P	Field mustard	cytosol	64.52	65.22
Bra022073.1-P	Field mustard	cytosol	62.01	64.79
Bra024989.1-P	Field mustard	cytosol	62.01	64.07
GSMUA_Achr7P04850_001	Banana	cytosol	61.65	63.0
Bra023256.1-P	Field mustard	cytosol	59.14	62.74
GSMUA_Achr1P15580_001	Banana	cytosol	60.93	62.27
GSMUA_Achr4P20770_001	Banana	cytosol	60.22	61.54
Bra012645.1-P	Field mustard	cytosol	61.29	61.51
TraesCS3D01G180500.1	Wheat	cytosol	60.93	61.37
TraesCS3A01G175000.1	Wheat	cytosol	60.57	61.01
HORVU3Hr1G035380.1	Barley	cytosol	60.22	60.65
GSMUA_Achr5P04090_001	Banana	cytosol	60.22	60.22
EES02705	Sorghum	cytosol	59.86	59.64
Os01t0254900-01	Rice	plasma membrane	59.14	58.93
Solyc06g072760.2.1	Tomato	cytosol	53.76	53.0
Os02t0702800-01	Rice	cytosol	48.39	50.56
EES05663	Sorghum	cytosol	47.67	49.63
Zm00001d040286_P003	Maize	cytosol	53.05	49.5
HORVU6Hr1G068640.1	Barley	cytosol	46.95	49.25
HORVU6Hr1G041590.1	Barley	cytosol	46.95	49.25
Zm00001d017756_P001	Maize	extracellular	42.29	47.58
TraesCS6A01G271000.1	Wheat	cytosol	43.73	45.35
TraesCS6D01G244100.2	Wheat	cytosol	46.59	44.52
TraesCS6B01G298100.3	Wheat	cytosol	43.73	44.04
PGSC0003DMT400069241	Potato	cytosol	41.58	43.61
Zm00001d008333_P003	Maize	cytosol	47.31	40.62
Zm00001d039536_P001	Maize	cytosol	34.77	36.88

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:22.7.1.2	EnsemblPlantsGene:Bra008592	EnsemblPlants:Bra008592.1	EnsemblPlants:Bra008592.1-P
GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005770	GO:GO:0005794	GO:GO:0006623
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016192	GO:GO:0030140	GO:GO:0045324	GO:GO:0061025	InterPro:IPR000727
UniProt:M4CWJ5	PFAM:PF05739	PFAM:PF14523	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957
PANTHER:PTHR19957:SF138	SMART:SM00397	SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS
InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI00025446B8	SEG:seg	:

Description

AT5G16830 (E=1e-096) SYP21, ATSYP21, PEP12, ATPEP12, PEP12P | SYP21 (SYNTAXIN OF PLANTS 21); SNAP receptor

Coordinates

chrA10:+:12958178..12960112

Molecular Weight (calculated)

31088.1 Da

IEP (calculated)

5.090

GRAVY (calculated)

-0.208

Length

279 amino acids

Sequence
(BLAST)

001: MSFQDIEAGS RFQTPNRFNS GRQQKPLSRG DPSQEVAAGI FRISTAVNSF FRLVNSIGTA KDTLELREKL QKTRLQISEL VKNTSAKLKE ASEVDLHGAA
101: SPIKKIADAK LAKDFQSVLK EFQKAQRLAA EREITYTPVV TQDIPASYDA QELDIESSRT SQEQTLLLQS RRQEVVFLDN EIIFNEAIIE EREQGIREIQ
201: EQIGEVNEIF KDLAVLVNDQ GVMIDDISSN IDNSHAATSQ ATAQLRKASK TQRANSSLTC LLILIFGIVI LIVIIVVLV

Best Arabidopsis Sequence Match ( AT5G16830.1 )
(BLAST)

001: MSFQDLEAGT RSPAPNRFTG GRQQRPSSRG DPSQEVAAGI FRISTAVNSF FRLVNSIGTP KDTLELRDKL QKTRLQISEL VKNTSAKLKE ASEADLHGSA
101: SQIKKIADAK LAKDFQSVLK EFQKAQRLAA EREITYTPVV TKEIPTSYNA PELDTESLRI SQQQALLLQS RRQEVVFLDN EITFNEAIIE EREQGIREIE
201: DQIRDVNGMF KDLALMVNHQ GNIVDDISSN LDNSHAATTQ ATVQLRKAAK TQRSNSSLTC LLILIFGIVL LIVIIVVLV

Arabidopsis Description

SYP21Syntaxin-21 [Source:UniProtKB/Swiss-Prot;Acc:Q39233]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.