Factsheet for Bra040178.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
vacuole 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78796	Canola	cytosol	99.28	99.28
AT4G17730.2	Thale cress	cytosol	80.07	84.35
Bra022073.1-P	Field mustard	cytosol	79.35	82.02
Bra012645.1-P	Field mustard	cytosol	82.61	82.01
Bra024989.1-P	Field mustard	cytosol	79.35	81.11
Solyc06g062360.2.1	Tomato	cytosol	77.9	78.75
PGSC0003DMT400043211	Potato	cytosol	77.9	78.75
Solyc11g066910.1.1	Tomato	plastid	77.9	78.75
Solyc08g005200.2.1	Tomato	cytosol	77.17	78.02
KRH07229	Soybean	endoplasmic reticulum	77.17	78.02
Solyc08g076540.2.1	Tomato	nucleus	77.17	78.02
PGSC0003DMT400038357	Potato	cytosol	76.45	77.29
KRH74378	Soybean	cytosol	76.45	77.29
KRH07476	Soybean	cytosol	76.09	76.92
KRH39570	Soybean	cytosol	76.09	76.92
VIT_02s0012g01850.t01	Wine grape	cytosol	76.09	76.64
PGSC0003DMT400084469	Potato	cytosol, golgi, mitochondrion, nucleus	17.39	76.19
Bra023256.1-P	Field mustard	cytosol	69.57	73.0
GSMUA_Achr7P04850_001	Banana	cytosol	69.93	70.7
GSMUA_Achr4P20770_001	Banana	cytosol	67.75	68.5
TraesCS3A01G175000.1	Wheat	cytosol	68.48	68.23
TraesCS3D01G180500.1	Wheat	cytosol	68.12	67.87
Os01t0254900-01	Rice	plasma membrane	68.84	67.86
GSMUA_Achr5P04090_001	Banana	cytosol	68.48	67.74
HORVU3Hr1G035380.1	Barley	cytosol	67.75	67.51
GSMUA_Achr1P15580_001	Banana	cytosol	66.3	67.03
PGSC0003DMT400068230	Potato	cytosol	72.83	66.34
EES02705	Sorghum	cytosol	67.03	66.07
Bra006372.1-P	Field mustard	cytosol, plastid	65.58	65.58
Bra008592.1-P	Field mustard	cytosol, plastid	65.22	64.52
Os02t0702800-01	Rice	cytosol	55.43	57.3
HORVU6Hr1G068640.1	Barley	cytosol	53.62	55.64
HORVU6Hr1G041590.1	Barley	cytosol	53.62	55.64
Zm00001d040286_P003	Maize	cytosol	60.14	55.52
PGSC0003DMT400045973	Potato	cytosol	26.45	54.48
Zm00001d017756_P001	Maize	extracellular	46.38	51.61
EES05663	Sorghum	cytosol	50.0	51.49
TraesCS6D01G244100.2	Wheat	cytosol	52.54	49.66
TraesCS6A01G271000.1	Wheat	cytosol	48.19	49.44
TraesCS6B01G298100.3	Wheat	cytosol	48.19	48.01
Zm00001d008333_P003	Maize	cytosol	51.09	43.38
Zm00001d039536_P001	Maize	cytosol	37.68	39.54

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:22.7.1.2	EnsemblPlantsGene:Bra040178	EnsemblPlants:Bra040178.1	EnsemblPlants:Bra040178.1-P
GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0061025	InterPro:IPR000727	UniProt:M4FGF0
PFAM:PF00804	PFAM:PF05739	PFAM:PF14523	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957
PANTHER:PTHR19957:SF135	SMART:SM00397	SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS
InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0002545CCB	SEG:seg	:

Description

AT4G17730 (E=9e-095) SYP23, ATSYP23 | SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptor

Coordinates

chrA01:+:4512316..4513646

Molecular Weight (calculated)

30407.4 Da

IEP (calculated)

7.836

GRAVY (calculated)

-0.324

Length

276 amino acids

Sequence
(BLAST)

001: MSFQDLEAGR GRSLASSRNI NGGGRQDTTQ AVASGIFQIN TSVSSFQRLV NTLGTPKDTP ELRDKLHKTR LQIGQLVKDT AAKLKEASET DHQRGVNQKK
101: KIVDAKLAKD FQSVLKEFQK AQRLAAERET VYAPLVTRPS PPSSYTPSEI DVKGDKHQEQ RALLVGSKRQ ELVLLDNEIA FNEAIIEERE QGIEEIQQQI
201: GEVHEIFKDL AVLVHDQGTM IDDISTHIDN SHAATALGKS HLAKASKTQR SNSSLTCLLL VIFGIVLLIV IIVLAV

Best Arabidopsis Sequence Match ( AT4G17730.2 )
(BLAST)

001: MSFQDLEAGR GRSLASSRNI NGGGSRQDTT QDVASGIFQI NTSVSTFHRL VNTLGTPKDT PELREKLHKT RLYIGQLVKD TSAKLKEASE TDHQRGVNQK
101: KKIVDAKLAK DFQAVLKEFQ KAQRLAAERE TVYAPLVHKP SLPSSYTSSE IDVNGDKHPE QRALLVESKR QELVLLDNEI AFNEAVIEER EQGIQEIQQQ
201: IGEVHEIFKD LAVLVHDQGN MIDDIGTHID NSYAATAQGK SHLVRHQRHK DQILLCLISP SS

Arabidopsis Description

SYP23AT4G17730 protein [Source:UniProtKB/TrEMBL;Acc:A8MS65]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.