Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES02705 | Sorghum | cytosol | 61.54 | 71.43 |
| TraesCS3A01G175000.1 | Wheat | cytosol | 57.85 | 67.87 |
| HORVU3Hr1G035380.1 | Barley | cytosol | 57.85 | 67.87 |
| TraesCS3D01G180500.1 | Wheat | cytosol | 57.54 | 67.51 |
| PGSC0003DMT400084469 | Potato | cytosol, golgi, mitochondrion, nucleus | 12.92 | 66.67 |
| Os01t0254900-01 | Rice | plasma membrane | 57.23 | 66.43 |
| Zm00001d040286_P003 | Maize | cytosol | 56.0 | 60.87 |
| KRH07229 | Soybean | endoplasmic reticulum | 47.08 | 56.04 |
| KRH07476 | Soybean | cytosol | 47.08 | 56.04 |
| VIT_02s0012g01850.t01 | Wine grape | cytosol | 47.08 | 55.84 |
| Solyc08g005200.2.1 | Tomato | cytosol | 46.46 | 55.31 |
| KRH74378 | Soybean | cytosol | 46.46 | 55.31 |
| PGSC0003DMT400038357 | Potato | cytosol | 46.46 | 55.31 |
| Solyc08g076540.2.1 | Tomato | nucleus | 46.46 | 55.31 |
| Solyc06g062360.2.1 | Tomato | cytosol | 46.15 | 54.95 |
| Bra023256.1-P | Field mustard | cytosol | 44.31 | 54.75 |
| CDY01290 | Canola | cytosol | 45.23 | 54.65 |
| PGSC0003DMT400043211 | Potato | cytosol | 45.85 | 54.58 |
| KRH39570 | Soybean | cytosol | 45.85 | 54.58 |
| Solyc11g066910.1.1 | Tomato | plastid | 45.85 | 54.58 |
| CDX93845 | Canola | cytosol | 44.0 | 54.37 |
| AT5G46860.1 | Thale cress | cytosol | 44.31 | 53.73 |
| Bra024989.1-P | Field mustard | cytosol | 44.62 | 53.7 |
| CDY33485 | Canola | cytosol | 44.62 | 53.7 |
| CDX77702 | Canola | cytosol | 44.62 | 53.51 |
| CDY37158 | Canola | cytosol | 43.69 | 53.18 |
| Bra022073.1-P | Field mustard | cytosol | 43.69 | 53.18 |
| GSMUA_Achr5P04090_001 | Banana | cytosol | 45.54 | 53.05 |
| CDY43620 | Canola | cytosol | 43.38 | 52.81 |
| AT4G17730.2 | Thale cress | cytosol | 42.46 | 52.67 |
| CDY01478 | Canola | cytosol | 44.31 | 51.99 |
| CDX90452 | Canola | cytosol | 44.31 | 51.8 |
| Bra012645.1-P | Field mustard | cytosol | 44.31 | 51.8 |
| GSMUA_Achr7P04850_001 | Banana | cytosol | 43.38 | 51.65 |
| CDY38084 | Canola | cytosol | 31.08 | 51.27 |
| CDX78796 | Canola | cytosol | 43.38 | 51.09 |
| Bra040178.1-P | Field mustard | cytosol | 43.38 | 51.09 |
| CDY60786 | Canola | cytosol | 42.77 | 50.92 |
| VIT_16s0039g01850.t01 | Wine grape | cytosol | 43.38 | 50.72 |
| CDX78712 | Canola | cytosol, plastid | 42.77 | 50.36 |
| Bra006372.1-P | Field mustard | cytosol, plastid | 42.77 | 50.36 |
| GSMUA_Achr4P20770_001 | Banana | cytosol | 42.15 | 50.18 |
| CDX70720 | Canola | cytosol, plastid | 42.46 | 50.0 |
| CDY16976 | Canola | cytosol, plastid | 41.54 | 48.91 |
| PGSC0003DMT400068230 | Potato | cytosol | 45.54 | 48.84 |
| GSMUA_Achr1P15580_001 | Banana | cytosol | 40.31 | 47.99 |
| Bra008592.1-P | Field mustard | cytosol, plastid | 40.62 | 47.31 |
| CDX69417 | Canola | cytosol, plastid | 40.31 | 46.95 |
| AT5G16830.1 | Thale cress | cytosol, plastid | 39.38 | 45.88 |
| Solyc06g072760.2.1 | Tomato | cytosol | 36.0 | 41.34 |
| Zm00001d017756_P001 | Maize | extracellular | 31.08 | 40.73 |
| PGSC0003DMT400045973 | Potato | cytosol | 15.69 | 38.06 |
| Zm00001d039536_P001 | Maize | cytosol | 29.23 | 36.12 |
| PGSC0003DMT400069241 | Potato | cytosol | 29.54 | 36.09 |
| Zm00001d044851_P001 | Maize | cytosol | 25.85 | 29.27 |
| AT1G32270.1 | Thale cress | nucleus | 32.0 | 25.0 |
| CDY03181 | Canola | cytosol | 20.0 | 24.9 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.2 | UniProt:A0A1D6FC22 | ProteinID:AQK89601.1 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 | InterPro:IPR000727 | PFAM:PF14523 |
| PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF138 | SMART:SM00397 | InterPro:SNARE | SUPFAM:SSF47661 |
| InterPro:Syntaxin_N | InterPro:T_SNARE_dom | UniParc:UPI000842B211 | EnsemblPlantsGene:Zm00001d008333 | EnsemblPlants:Zm00001d008333_P003 | EnsemblPlants:Zm00001d008333_T003 |
| SEG:seg | : | : | : | : | : |
Description
Syntaxin-22
Coordinates
chr8:+:5563241..5567351
Molecular Weight (calculated)
35142.9 Da
IEP (calculated)
8.118
GRAVY (calculated)
-0.181
Length
325 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFQDLEAGH VRGAPPGGGR RSGRAGGAGA GAGASQAVAS GVFQINTAVA TFQRLVNTLG TPKDTPDLRD RMCVRSPTRL PALPFAPQPV PIAVPLIPIC
101: FGIADSARSA FGPPGKLRFV PVATKKIADA KLAKDFQAVL KEFQKAQRLA AEREAAYAPF ISQAGLPQSY NSSEVNNGAD RLAEQRTQLL ESRRQELVFL
201: DNEIVFNEAI IEERDQGIQE IQHQITEVNE IFKDLAVLVH DQGAMIDMLV ARYFRSGPAH SDNSTCSLKA WKAAGVPKSD RELIATNSFI SYFCCAARND
301: SWYPGGDWRS ACGVAVYVVM MKSDT
101: FGIADSARSA FGPPGKLRFV PVATKKIADA KLAKDFQAVL KEFQKAQRLA AEREAAYAPF ISQAGLPQSY NSSEVNNGAD RLAEQRTQLL ESRRQELVFL
201: DNEIVFNEAI IEERDQGIQE IQHQITEVNE IFKDLAVLVH DQGAMIDMLV ARYFRSGPAH SDNSTCSLKA WKAAGVPKSD RELIATNSFI SYFCCAARND
301: SWYPGGDWRS ACGVAVYVVM MKSDT
001: MSFQDLESGR GRSTRKFNGG RQDSTQAVAS GIFQINTGVS TFQRLVNTLG TPKDTPELRE KLHKTRLHIG QLVKDTSAKL KEASETDHQS GVNPSKKIAD
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA
Arabidopsis Description
SYP22VAM3 [Source:UniProtKB/TrEMBL;Acc:A0A178UDT6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.