Factsheet for Zm00001d032668_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014065_P001
Zm00001d032775_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17880.1	Zm00001d014065_P001	AT5G35620.1	15716105
AT1G17880.1	Zm00001d032775_P002	AT5G35620.1	15716105

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013999_P001	Maize	plastid	97.58	97.58
EER91468	Sorghum	cytosol	97.58	96.99
TraesCS1D01G156700.1	Wheat	cytosol	94.55	93.41
TraesCS1B01G175700.1	Wheat	mitochondrion	95.76	90.29
TraesCS1A01G159300.1	Wheat	cytosol, nucleus, plastid	95.15	89.71
VIT_17s0053g00620.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	81.82	84.38
Zm00001d048526_P001	Maize	extracellular	82.42	83.44
Solyc07g008720.2.1	Tomato	nucleus	81.82	83.33
Solyc09g010330.2.1	Tomato	nucleus	81.21	82.72
Zm00001d027318_P001	Maize	extracellular, mitochondrion, plastid	84.24	82.25
KRH29394	Soybean	cytosol, mitochondrion, nucleus, plastid	80.61	82.1
PGSC0003DMT400073918	Potato	cytosol	76.36	81.82
KRH29395	Soybean	cytosol	80.0	81.48
KRH24412	Soybean	endoplasmic reticulum	79.39	81.37
PGSC0003DMT400022830	Potato	cytosol	75.15	80.52
KRH75358	Soybean	endoplasmic reticulum	77.58	80.5
Zm00001d034855_P001	Maize	extracellular	74.55	77.85
AT1G73230.1	Thale cress	mitochondrion	77.58	77.58
AT1G17880.1	Thale cress	mitochondrion	76.36	76.36
Bra031007.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	70.91	75.0
CDY21729	Canola	cytosol, mitochondrion, nucleus, plastid	70.91	75.0
Bra008086.1-P	Field mustard	mitochondrion	75.15	74.25
Bra025940.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	74.55	74.1
CDY26207	Canola	cytosol, mitochondrion, nucleus, plastid	74.55	74.1
Bra003851.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	73.33	73.78
CDX81852	Canola	cytosol, mitochondrion, nucleus, plastid	72.73	73.62
CDX96457	Canola	cytosol, mitochondrion, nucleus, plastid	73.94	73.49
Bra016010.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	73.94	73.49
CDX68236	Canola	cytosol, mitochondrion, nucleus, plastid	73.33	73.33
CDX72966	Canola	cytosol, mitochondrion, nucleus, plastid	72.73	72.29
CDX83885	Canola	mitochondrion	70.91	70.91
CDY19183	Canola	mitochondrion	74.55	69.49
GSMUA_Achr1P02000_001	Banana	plastid	83.03	63.43
HORVU1Hr1G042270.1	Barley	nucleus, peroxisome, plastid	95.15	58.15
CDX82088	Canola	mitochondrion	75.76	58.14
CDY11119	Canola	mitochondrion	73.94	55.71
CDY65091	Canola	mitochondrion	76.97	55.22
Solyc06g050640.1.1	Tomato	mitochondrion	20.0	47.83
Bra016579.1-P	Field mustard	cytosol	72.12	35.31
CDX96745	Canola	cytosol, golgi, mitochondrion, plastid	71.52	29.72

Protein Annotations

EntrezGene:105667212	MapMan:19.1.2.1.2	Gene3D:2.20.70.30	UniProt:B4FIE5	EMBL:BT036883	EMBL:EU972220
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR002715	InterPro:IPR038187	InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom	ProteinID:ONM05692.1
PFAM:PF01849	PFscan:PS51151	PANTHER:PTHR10351	PANTHER:PTHR10351:SF47	SMART:SM01407	UniParc:UPI000160B6A2
EnsemblPlantsGene:Zm00001d032668	EnsemblPlants:Zm00001d032668_P001	EnsemblPlants:Zm00001d032668_T001	SEG:seg	:	:

Description

Basic transcription factor 3

Coordinates

chr1:+:233716808..233720568

Molecular Weight (calculated)

17769.0 Da

IEP (calculated)

7.543

GRAVY (calculated)

-0.631

Length

165 amino acids

Sequence
(BLAST)

001: MNVEKLKKMA GAVRTGGKGS MRRKKKAVHK TTTTDDKRLQ STLKRIGVNT IPGIEEVNIF KDDVVIQFVN PKVQASIGAN TWVVSGTPQT KKLQDLLPSI
101: INQLGPDNLD NLRRLAEQFQ KQAPGASGAE AGASAGAAQD DDDDVPELVP GETFEEAAEE KKESS

Best Arabidopsis Sequence Match ( AT1G17880.1 )
(BLAST)

001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKRLQ STLKRIGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGSPQT KKLQDILPQI
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS

Arabidopsis Description

BTF3Basic transcription factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMW7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.