Factsheet for HORVU1Hr1G042270.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus

Predictor Summary:

mitochondrion 1
peroxisome 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, peroxisome, plastid
Any Predictor:	mitochondrion, peroxisome, plastid
iPSORT:	mitochondrion
MultiLoc:	peroxisome
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G039260.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17880.1	HORVU1Hr1G039260.2	AT5G35620.1	15716105

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G156700.1	Wheat	cytosol	60.74	98.2
TraesCS1B01G175700.1	Wheat	mitochondrion	61.85	95.43
Zm00001d032668_P001	Maize	plastid	58.15	95.15
EER91468	Sorghum	cytosol	57.78	93.98
TraesCS1A01G159300.1	Wheat	cytosol, nucleus, plastid	60.74	93.71
Zm00001d013999_P001	Maize	plastid	56.67	92.73
VIT_17s0053g00620.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	49.63	83.75
Solyc07g008720.2.1	Tomato	nucleus	48.89	81.48
KRH29394	Soybean	cytosol, mitochondrion, nucleus, plastid	48.89	81.48
KRH75358	Soybean	endoplasmic reticulum	47.78	81.13
Solyc09g010330.2.1	Tomato	nucleus	48.52	80.86
KRH29395	Soybean	cytosol	48.52	80.86
KRH24412	Soybean	endoplasmic reticulum	48.15	80.75
PGSC0003DMT400022830	Potato	cytosol	45.56	79.87
PGSC0003DMT400073918	Potato	cytosol	45.19	79.22
AT1G73230.1	Thale cress	mitochondrion	47.41	77.58
Bra008086.1-P	Field mustard	mitochondrion	47.04	76.05
AT1G17880.1	Thale cress	mitochondrion	45.93	75.15
CDY26207	Canola	cytosol, mitochondrion, nucleus, plastid	45.93	74.7
Bra016010.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	45.93	74.7
Bra025940.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	45.93	74.7
CDX96457	Canola	cytosol, mitochondrion, nucleus, plastid	45.93	74.7
CDY21729	Canola	cytosol, mitochondrion, nucleus, plastid	42.96	74.36
Bra031007.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	42.96	74.36
HORVU4Hr1G090110.2	Barley	plastid	57.41	73.81
Bra003851.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	44.81	73.78
CDX81852	Canola	cytosol, mitochondrion, nucleus, plastid	44.44	73.62
CDX72966	Canola	cytosol, mitochondrion, nucleus, plastid	45.19	73.49
CDX68236	Canola	cytosol, mitochondrion, nucleus, plastid	44.81	73.33
CDX83885	Canola	mitochondrion	43.7	71.52
CDY19183	Canola	mitochondrion	45.56	69.49
HORVU2Hr1G035430.1	Barley	cytosol, nucleus	15.93	66.15
GSMUA_Achr1P02000_001	Banana	plastid	52.22	65.28
HORVU3Hr1G021640.1	Barley	cytosol, nucleus	19.26	61.18
HORVU5Hr1G040910.1	Barley	cytosol, nucleus	19.26	61.18
HORVU4Hr1G012300.2	Barley	cytosol, nucleus, plastid	21.11	60.64
CDX82088	Canola	mitochondrion	48.15	60.47
HORVU1Hr1G036940.2	Barley	cytosol	11.48	59.62
CDY11119	Canola	mitochondrion	47.41	58.45
CDY65091	Canola	mitochondrion	48.89	57.39
HORVU5Hr1G122170.4	Barley	plastid	43.7	56.19
HORVU0Hr1G024200.2	Barley	cytosol, mitochondrion	22.59	54.95
HORVU5Hr1G048580.1	Barley	cytosol, mitochondrion	20.37	50.93
Solyc06g050640.1.1	Tomato	mitochondrion	12.59	49.28
HORVU7Hr1G026830.2	Barley	mitochondrion	27.41	48.68
HORVU6Hr1G018230.1	Barley	plastid	18.15	40.16
Bra016579.1-P	Field mustard	cytosol	47.41	37.98
CDX96745	Canola	cytosol, golgi, mitochondrion, plastid	47.04	31.99

Protein Annotations

EnsemblPlants:HORVU1Hr1G042270.1	EnsemblPlantsGene:HORVU1Hr1G042270	Gene3D:2.20.70.30	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR002715	InterPro:IPR038187
InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom	PANTHER:PTHR10351	PANTHER:PTHR10351:SF47	PFAM:PF01849	PFscan:PS51151
SEG:seg	SMART:SM01407	UniParc:UPI000B46C189	UniProt:A0A287FAE0	MapMan:19.1.2.1.2	:

Description

Nascent polypeptide-associated complex subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A287FAE0]

Coordinates

chrchr1H:-:305343640..305346192

Molecular Weight (calculated)

28521.7 Da

IEP (calculated)

10.372

GRAVY (calculated)

-0.684

Length

270 amino acids

Sequence
(BLAST)

001: ATRTQSQGGR NTRTHPNAER IPSATSTAAV HRASHGQDSP GVKTLKLKEG SHRATQPPVP TPIRSSTPGL SRSYPLLPPR AAAGADADAA ASAPPPAKMN
101: VEKLKKMAGA VRTGGKGSMR RKKKAVHKTT TTDDKRLQST LKRVGVNTIP GIEEVNIFKD DVVIQFLNPK VQASIGANTW VVSGTPQTKK LQDLLPSIIN
201: QLGPDNLDNL RRLAEQFQKQ VPGGAAGIEA GASAGAAQAD DDDDVPELVP GETFEEAAEE KKAEEKKAES

Best Arabidopsis Sequence Match ( AT1G17880.1 )
(BLAST)

001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKRLQ STLKRIGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGSPQT KKLQDILPQI
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS

Arabidopsis Description

BTF3Basic transcription factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMW7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.