CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90357
KRH33614

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17880.1	KRG90357	AT5G35620.1	15716105
AT1G17880.1	KRH33614	AT5G35620.1	15716105

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29394	Soybean	cytosol, mitochondrion, nucleus, plastid	98.76	98.15
KRH29395	Soybean	cytosol	95.65	95.06
KRH75358	Soybean	endoplasmic reticulum	85.71	86.79
PGSC0003DMT400022830	Potato	cytosol	80.75	84.42
Solyc09g010330.2.1	Tomato	nucleus	84.47	83.95
Solyc07g008720.2.1	Tomato	nucleus	84.47	83.95
VIT_17s0053g00620.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	82.61	83.12
PGSC0003DMT400073918	Potato	cytosol	79.5	83.12
AT1G17880.1	Thale cress	mitochondrion	83.85	81.82
GSMUA_Achr6P08310_001	Banana	cytosol	80.12	81.65
AT1G73230.1	Thale cress	mitochondrion	81.99	80.0
Zm00001d032668_P001	Maize	plastid	81.37	79.39
Zm00001d013999_P001	Maize	plastid	81.37	79.39
CDX81852	Canola	cytosol, mitochondrion, nucleus, plastid	80.12	79.14
GSMUA_Achr3P18580_001	Banana	cytosol	77.02	78.48
CDX96457	Canola	cytosol, mitochondrion, nucleus, plastid	80.75	78.31
Bra016010.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	80.75	78.31
Bra003851.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	79.5	78.05
TraesCS1D01G156700.1	Wheat	cytosol	80.75	77.84
CDY26207	Canola	cytosol, mitochondrion, nucleus, plastid	80.12	77.71
Bra025940.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	80.12	77.71
CDX72966	Canola	cytosol, mitochondrion, nucleus, plastid	79.5	77.11
EER91468	Sorghum	cytosol	79.5	77.11
Bra008086.1-P	Field mustard	mitochondrion	79.5	76.65
CDX68236	Canola	cytosol, mitochondrion, nucleus, plastid	78.26	76.36
CDY21729	Canola	cytosol, mitochondrion, nucleus, plastid	73.91	76.28
Bra031007.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	73.91	76.28
CDX83885	Canola	mitochondrion	77.64	75.76
TraesCS1B01G175700.1	Wheat	mitochondrion	81.37	74.86
EER93008	Sorghum	cytosol	77.02	74.25
Zm00001d048526_P001	Maize	extracellular	75.16	74.23
TraesCS1A01G159300.1	Wheat	cytosol, nucleus, plastid	80.12	73.71
CDY19183	Canola	mitochondrion	80.12	72.88
Zm00001d027318_P001	Maize	extracellular, mitochondrion, plastid	75.16	71.6
Os03t0109600-01	Rice	plasma membrane	77.02	70.86
TraesCSU01G127100.1	Wheat	cytosol	77.64	70.62
TraesCS5A01G550800.1	Wheat	cytosol	77.64	70.62
GSMUA_Achr6P16240_001	Banana	golgi, vacuole	79.5	68.45
GSMUA_AchrUn_...	Banana	plastid	80.75	67.36
TraesCS4B01G385900.2	Wheat	plastid	78.26	65.97
GSMUA_Achr10P...	Banana	plastid	80.12	62.93
HORVU4Hr1G090110.2	Barley	plastid	78.88	60.48
CDX82088	Canola	mitochondrion	79.5	59.53
CDY11119	Canola	mitochondrion	78.88	57.99
CDY65091	Canola	mitochondrion	80.12	56.09
Solyc06g050640.1.1	Tomato	mitochondrion	23.6	55.07
HORVU1Hr1G042270.1	Barley	nucleus, peroxisome, plastid	80.75	48.15
Bra016579.1-P	Field mustard	cytosol	78.88	37.69
CDX96745	Canola	cytosol, golgi, mitochondrion, plastid	78.26	31.74

Protein Annotations

MapMan:19.1.2.1.2	Gene3D:2.20.70.30	UniProt:A0A0R0H141	EMBL:ACUP02007175	EnsemblPlantsGene:GLYMA_12G039900	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR002715	InterPro:IPR038187	EnsemblPlants:KRH24412	ProteinID:KRH24412	ProteinID:KRH24412.1	InterPro:NAC_A/B_dom_sf
InterPro:Nas_poly-pep-assoc_cplx_dom	PFAM:PF01849	PFscan:PS51151	PANTHER:PTHR10351	PANTHER:PTHR10351:SF47	SMART:SM01407
UniParc:UPI0001B638AC	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:2877655..2880570

Molecular Weight (calculated)

17548.9 Da

IEP (calculated)

9.022

GRAVY (calculated)

-0.609

Length

161 amino acids

Sequence
(BLAST)

001: MNREKLMKMA GSVRTGGKGT VRRKKKAVHK TTTTDDKRLQ STLKRIGVNA IPAIEEVNIF KDDVVIQFLN PKVQASIAAN TWVVSGSPQT KKLQDILPSI
101: IHQLGPDNLE NLKKLAEQFQ KQAPEGAAGS TTAQEENDDD VPELVPGQDF ETAAEETKAA S

Best Arabidopsis Sequence Match ( AT1G17880.1 )
(BLAST)

001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKRLQ STLKRIGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGSPQT KKLQDILPQI
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS

Arabidopsis Description

BTF3Basic transcription factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMW7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.