CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016010.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	100.0	100.0
CDX72966	Canola	cytosol, mitochondrion, nucleus, plastid	95.18	95.18
AT1G73230.1	Thale cress	mitochondrion	83.73	84.24
CDX68236	Canola	cytosol, mitochondrion, nucleus, plastid	82.53	83.03
CDY26207	Canola	cytosol, mitochondrion, nucleus, plastid	81.33	81.33
KRH24412	Soybean	endoplasmic reticulum	78.31	80.75
KRH29394	Soybean	cytosol, mitochondrion, nucleus, plastid	78.31	80.25
CDX81852	Canola	cytosol, mitochondrion, nucleus, plastid	78.31	79.75
KRH29395	Soybean	cytosol	77.71	79.63
GSMUA_Achr6P08310_001	Banana	cytosol	75.3	79.11
CDY21729	Canola	cytosol, mitochondrion, nucleus, plastid	74.1	78.85
CDX83885	Canola	mitochondrion	78.31	78.79
Solyc07g008720.2.1	Tomato	nucleus	76.51	78.4
KRH75358	Soybean	endoplasmic reticulum	74.7	77.99
PGSC0003DMT400073918	Potato	cytosol	72.29	77.92
PGSC0003DMT400022830	Potato	cytosol	72.29	77.92
Solyc09g010330.2.1	Tomato	nucleus	75.3	77.16
VIT_17s0053g00620.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	72.89	75.62
CDY19183	Canola	mitochondrion	80.12	75.14
Zm00001d013999_P001	Maize	plastid	74.1	74.55
Zm00001d032668_P001	Maize	plastid	73.49	73.94
EER91468	Sorghum	cytosol	73.49	73.49
TraesCS1D01G156700.1	Wheat	cytosol	73.49	73.05
GSMUA_Achr3P18580_001	Banana	cytosol	69.28	72.78
Zm00001d048526_P001	Maize	extracellular	69.88	71.17
TraesCS1B01G175700.1	Wheat	mitochondrion	74.7	70.86
TraesCS1A01G159300.1	Wheat	cytosol, nucleus, plastid	74.7	70.86
TraesCSU01G127100.1	Wheat	cytosol	75.3	70.62
TraesCS5A01G550800.1	Wheat	cytosol	75.3	70.62
EER93008	Sorghum	cytosol	69.88	69.46
Os03t0109600-01	Rice	plasma membrane	72.89	69.14
Zm00001d027318_P001	Maize	extracellular, mitochondrion, plastid	69.88	68.64
CDY11119	Canola	mitochondrion	89.16	67.58
TraesCS4B01G385900.2	Wheat	plastid	75.9	65.97
GSMUA_Achr6P16240_001	Banana	golgi, vacuole	72.89	64.71
CDX82088	Canola	mitochondrion	81.93	63.26
GSMUA_AchrUn_...	Banana	plastid	72.89	62.69
CDY65091	Canola	mitochondrion	83.73	60.43
HORVU4Hr1G090110.2	Barley	plastid	75.9	60.0
GSMUA_Achr10P...	Banana	plastid	71.69	58.05
Solyc06g050640.1.1	Tomato	mitochondrion	22.89	55.07
HORVU1Hr1G042270.1	Barley	nucleus, peroxisome, plastid	74.7	45.93
CDX96745	Canola	cytosol, golgi, mitochondrion, plastid	77.71	32.49

Protein Annotations

EnsemblPlants:CDX96457	EnsemblPlantsGene:GSBRNA2T00102629001	Gene3D:2.20.70.30	GO:A0A078E5V5	InterPro:IPR002715	InterPro:IPR038187
InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom	PANTHER:PTHR10351	PANTHER:PTHR10351:SF47	PFAM:PF01849	PFscan:PS51151
ProteinID:CDX96457	ProteinID:CDX96457.1	SEG:seg	SMART:SM01407	UniParc:UPI0002541CC3	MapMan:19.1.2.1.2

Description

BnaA07g30680D

Coordinates

chrLK031894:-:932688..934227

Molecular Weight (calculated)

18096.5 Da

IEP (calculated)

7.541

GRAVY (calculated)

-0.640

Length

166 amino acids

Sequence
(BLAST)

001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKKLQ STLKRVGVNS IPGIEEVNIF KDDVVIQFIN PKVQASIAAN TWAVSGTPQT KKLQDILPQI
101: ISQLGTDNLE NLKKLAEQFQ KQTPGGADIP ATIQEEDDDD VPELVGGETF ETPATEEAAQ PKATAS

Best Arabidopsis Sequence Match ( AT1G73230.1 )
(BLAST)

001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TTTTDDKRLQ STLKRVGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGTPQT KKLQDILPQI
101: ISQLGPDNLD NLKKLAEQFQ KQAPGAGDVP ATIQEEDDDD DVPDLVVGET FETPATEEAP KAAAS

Arabidopsis Description

Nascent polypeptide-associated complex subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q9CAT7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.