Factsheet for Bra025940.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra035393.1-P
Bra035531.1-P
Bra039484.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17880.1	Bra035393.1-P	AT5G35620.1	15716105
AT1G17880.1	Bra035531.1-P	AT5G35620.1	15716105
AT1G17880.1	Bra039484.1-P	AT5G35620.1	15716105

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26207	Canola	cytosol, mitochondrion, nucleus, plastid	100.0	100.0
Bra031007.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	84.34	89.74
AT1G17880.1	Thale cress	mitochondrion	86.14	86.67
Bra003851.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	80.72	81.71
Bra016010.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	81.33	81.33
Bra008086.1-P	Field mustard	mitochondrion	81.33	80.84
KRH24412	Soybean	endoplasmic reticulum	77.71	80.12
KRH29395	Soybean	cytosol	77.71	79.63
KRH29394	Soybean	cytosol, mitochondrion, nucleus, plastid	77.71	79.63
VIT_17s0053g00620.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	76.51	79.38
PGSC0003DMT400022830	Potato	cytosol	72.89	78.57
GSMUA_Achr6P08310_001	Banana	cytosol	74.7	78.48
PGSC0003DMT400073918	Potato	cytosol	72.29	77.92
Solyc07g008720.2.1	Tomato	nucleus	75.9	77.78
KRH75358	Soybean	endoplasmic reticulum	74.1	77.36
Solyc09g010330.2.1	Tomato	nucleus	74.7	76.54
GSMUA_Achr3P18580_001	Banana	cytosol	71.69	75.32
Zm00001d013999_P001	Maize	plastid	74.7	75.15
Zm00001d032668_P001	Maize	plastid	74.1	74.55
EER91468	Sorghum	cytosol	73.49	73.49
TraesCS1D01G156700.1	Wheat	cytosol	72.29	71.86
Zm00001d048526_P001	Maize	extracellular	69.28	70.55
TraesCS1A01G159300.1	Wheat	cytosol, nucleus, plastid	73.49	69.71
TraesCS1B01G175700.1	Wheat	mitochondrion	73.49	69.71
EER93008	Sorghum	cytosol	69.88	69.46
Os03t0109600-01	Rice	plasma membrane	72.29	68.57
TraesCS5A01G550800.1	Wheat	cytosol	72.89	68.36
TraesCSU01G127100.1	Wheat	cytosol	72.89	68.36
Zm00001d027318_P001	Maize	extracellular, mitochondrion, plastid	69.28	68.05
GSMUA_Achr6P16240_001	Banana	golgi, vacuole	74.7	66.31
TraesCS4B01G385900.2	Wheat	plastid	73.49	63.87
GSMUA_AchrUn_...	Banana	plastid	74.1	63.73
GSMUA_Achr10P...	Banana	plastid	72.29	58.54
HORVU4Hr1G090110.2	Barley	plastid	72.89	57.62
HORVU1Hr1G042270.1	Barley	nucleus, peroxisome, plastid	74.7	45.93
Solyc06g050640.1.1	Tomato	mitochondrion	18.67	44.93
Bra016579.1-P	Field mustard	cytosol	83.13	40.95

Protein Annotations

MapMan:19.1.2.1.2	Gene3D:2.20.70.30	EnsemblPlantsGene:Bra025940	EnsemblPlants:Bra025940.1	EnsemblPlants:Bra025940.1-P	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR002715	InterPro:IPR038187	UniProt:M4EAY1	InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom	PFAM:PF01849
PFscan:PS51151	PANTHER:PTHR10351	PANTHER:PTHR10351:SF47	SMART:SM01407	UniParc:UPI0001B63901	SEG:seg

Description

AT1G17880 (E=8e-061) | nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative

Coordinates

chrA06:-:6869695..6870545

Molecular Weight (calculated)

18007.4 Da

IEP (calculated)

7.542

GRAVY (calculated)

-0.603

Length

166 amino acids

Sequence
(BLAST)

001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKKLQ STLKRIGVNS IPAIEEVNIF KDDVVIQFTN PKVQASIAAN TWVVSGSPQT KKLEDILPQI
101: LSQLGPDNMD NLRKLAEQLK KQPPGEGNAS ATIQEEDDDD VPELVAGETF EAAAAEEKVA APAASS

Best Arabidopsis Sequence Match ( AT1G17880.1 )
(BLAST)

001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKRLQ STLKRIGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGSPQT KKLQDILPQI
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS

Arabidopsis Description

BTF3Basic transcription factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMW7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.