Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 2
- golgi 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78712 | Canola | cytosol, plastid | 98.55 | 98.55 |
| CDY16976 | Canola | cytosol, plastid | 93.84 | 93.84 |
| CDX69417 | Canola | cytosol, plastid | 90.22 | 89.25 |
| CDY38084 | Canola | cytosol | 61.59 | 86.29 |
| AT5G16830.1 | Thale cress | cytosol, plastid | 86.23 | 85.3 |
| CDY37158 | Canola | cytosol | 64.13 | 66.29 |
| CDX78796 | Canola | cytosol | 65.58 | 65.58 |
| CDY43620 | Canola | cytosol | 63.41 | 65.54 |
| VIT_16s0039g01850.t01 | Wine grape | cytosol | 65.22 | 64.75 |
| CDY01478 | Canola | cytosol | 64.86 | 64.62 |
| CDY33485 | Canola | cytosol | 63.04 | 64.44 |
| TraesCS3A01G175000.1 | Wheat | cytosol | 64.49 | 64.26 |
| CDX77702 | Canola | cytosol | 63.04 | 64.21 |
| CDX90452 | Canola | cytosol | 64.49 | 64.03 |
| TraesCS3D01G180500.1 | Wheat | cytosol | 64.13 | 63.9 |
| HORVU3Hr1G035380.1 | Barley | cytosol | 64.13 | 63.9 |
| CDY60786 | Canola | cytosol | 62.68 | 63.37 |
| GSMUA_Achr7P04850_001 | Banana | cytosol | 62.68 | 63.37 |
| CDY01290 | Canola | cytosol | 61.59 | 63.2 |
| CDX93845 | Canola | cytosol | 59.78 | 62.74 |
| EES02705 | Sorghum | cytosol | 63.04 | 62.14 |
| GSMUA_Achr1P15580_001 | Banana | cytosol | 61.23 | 61.9 |
| GSMUA_Achr4P20770_001 | Banana | cytosol | 60.87 | 61.54 |
| Os01t0254900-01 | Rice | plasma membrane | 62.32 | 61.43 |
| GSMUA_Achr5P04090_001 | Banana | cytosol | 60.51 | 59.86 |
| Solyc06g072760.2.1 | Tomato | cytosol | 54.35 | 53.0 |
| EES05663 | Sorghum | cytosol | 50.36 | 51.87 |
| Os02t0702800-01 | Rice | cytosol | 49.64 | 51.31 |
| Zm00001d040286_P003 | Maize | cytosol | 55.07 | 50.84 |
| HORVU6Hr1G041590.1 | Barley | cytosol | 48.91 | 50.75 |
| HORVU6Hr1G068640.1 | Barley | cytosol | 48.91 | 50.75 |
| Zm00001d017756_P001 | Maize | extracellular | 44.57 | 49.6 |
| TraesCS6A01G271000.1 | Wheat | cytosol | 45.29 | 46.47 |
| TraesCS6D01G244100.2 | Wheat | cytosol | 48.19 | 45.55 |
| TraesCS6B01G298100.3 | Wheat | cytosol | 44.57 | 44.4 |
| PGSC0003DMT400069241 | Potato | cytosol | 40.94 | 42.48 |
| Zm00001d008333_P003 | Maize | cytosol | 50.0 | 42.46 |
| Zm00001d039536_P001 | Maize | cytosol | 37.68 | 39.54 |
| CDY03181 | Canola | cytosol | 25.36 | 26.82 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.2 | GO:A0A078C1D3 | EnsemblPlants:CDX70720 | ProteinID:CDX70720 |
| ProteinID:CDX70720.1 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 |
| GO:GO:0016192 | GO:GO:0061025 | EnsemblPlantsGene:GSBRNA2T00140587001 | InterPro:IPR000727 | PFAM:PF05739 | PFAM:PF14523 |
| ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF138 | SMART:SM00397 | SMART:SM00503 |
| InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom |
| UniParc:UPI0004EF286C | SEG:seg | : | : | : | : |
Description
BnaC03g08040D
Coordinates
chrLK031791:-:1709964..1712039
Molecular Weight (calculated)
30736.8 Da
IEP (calculated)
5.244
GRAVY (calculated)
-0.247
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFQDLEAGS RFQQPNRGRQ QRPPSRGDPS QEVAAGIFRI STALNSFFRL VNSIGTPKDT LDLRDKLQKT RLQISELVKN TSAKLKEASE ADLHGAASPI
101: KKIADAKLAK DFQSVLKEFQ KAQRLAAERE ITYTPVVTID IPTSYNAQEL DTESLRTSQQ QTLLLQSRRQ EVVFLDNEIT FNEAIIEERE QGIREIQEQI
201: GEVNEIFKDL AVLVNDQGVM IDDISSNIDN SQAATAQATA QLRKAAKTQR ANSSLTCLLI LIFGIVLLIV IIVVLV
101: KKIADAKLAK DFQSVLKEFQ KAQRLAAERE ITYTPVVTID IPTSYNAQEL DTESLRTSQQ QTLLLQSRRQ EVVFLDNEIT FNEAIIEERE QGIREIQEQI
201: GEVNEIFKDL AVLVNDQGVM IDDISSNIDN SQAATAQATA QLRKAAKTQR ANSSLTCLLI LIFGIVLLIV IIVVLV
001: MSFQDLEAGT RSPAPNRFTG GRQQRPSSRG DPSQEVAAGI FRISTAVNSF FRLVNSIGTP KDTLELRDKL QKTRLQISEL VKNTSAKLKE ASEADLHGSA
101: SQIKKIADAK LAKDFQSVLK EFQKAQRLAA EREITYTPVV TKEIPTSYNA PELDTESLRI SQQQALLLQS RRQEVVFLDN EITFNEAIIE EREQGIREIE
201: DQIRDVNGMF KDLALMVNHQ GNIVDDISSN LDNSHAATTQ ATVQLRKAAK TQRSNSSLTC LLILIFGIVL LIVIIVVLV
101: SQIKKIADAK LAKDFQSVLK EFQKAQRLAA EREITYTPVV TKEIPTSYNA PELDTESLRI SQQQALLLQS RRQEVVFLDN EITFNEAIIE EREQGIREIE
201: DQIRDVNGMF KDLALMVNHQ GNIVDDISSN LDNSHAATTQ ATVQLRKAAK TQRSNSSLTC LLILIFGIVL LIVIIVVLV
Arabidopsis Description
SYP21Syntaxin-21 [Source:UniProtKB/Swiss-Prot;Acc:Q39233]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.