CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73889
CDX74445
CDX74451
CDX79189
CDX79215
CDX79222
CDX90537
CDX92459
CDX95233
CDY00724
CDY00997
CDY08549
CDY09707
CDY13575
CDY16539
CDY30250
CDY32227
CDY34441
CDY36301
CDY37005
CDY38360
CDY45086
CDY70457

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52850.1	CDX79189	AT1G77140.1	10888666
AT3G52850.1	CDX79215	AT1G77140.1	10888666
AT3G52850.1	CDX79222	AT1G77140.1	10888666
AT3G52850.1	CDY13575	AT1G77140.1	10888666
AT3G52850.1	CDY38360	AT1G77140.1	10888666
AT3G52850.1	CDY70457	AT1G77140.1	10888666
AT3G52850.1	CDX73889	AT3G11130.1	16905657
AT3G52850.1	CDY00724	AT3G11130.1	16905657
AT3G52850.1	CDY00997	AT3G11130.1	16905657
AT3G52850.1	CDY08549	AT3G11130.1	16905657
AT3G52850.1	CDY36301	AT3G11130.1	16905657
AT3G52850.1	CDX90537	AT4G16190.1	23738689
AT3G52850.1	CDY09707	AT4G16190.1	23738689
AT3G52850.1	CDY32227	AT4G16190.1	23738689
AT3G52850.1	CDY34441	AT4G16190.1	23738689
AT3G52850.1	CDX92459	AT5G20500.1	23738689
AT3G52850.1	CDY16539	AT5G20500.1	23738689
AT3G52850.1	CDY45086	AT5G20500.1	23738689
AT3G52850.1	CDX74445	AT5G39510.1	10397763
AT3G52850.1	CDX74451	AT5G39510.1	10397763
AT3G52850.1	CDX95233	AT5G39510.1	10397763
AT3G52850.1	CDY30250	AT5G39510.1	10397763
AT3G52850.1	CDY37005	AT5G39510.1	10397763

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78128	Canola	plasma membrane	98.56	98.56
CDX67539	Canola	plasma membrane	94.4	94.4
CDY13344	Canola	plasma membrane	94.08	94.08
AT3G52850.1	Thale cress	extracellular, golgi, plasma membrane	92.8	93.1
CDY60753	Canola	plasma membrane	80.0	80.65
CDX91478	Canola	plasma membrane	80.0	80.65
VIT_08s0058g01360.t01	Wine grape	plasma membrane	76.0	76.12
CDY37219	Canola	extracellular, golgi, plasma membrane	70.24	70.35
CDX81459	Canola	plasma membrane	69.76	69.87
CDY65441	Canola	plasma membrane	69.76	69.1
CDX93144	Canola	extracellular, plasma membrane, vacuole	67.2	68.85
CDY04821	Canola	mitochondrion, plasma membrane	69.6	68.5
CDY62643	Canola	mitochondrion	10.4	68.42
CDY38158	Canola	cytosol, plasma membrane	30.72	63.58
CDY62642	Canola	cytosol, plasma membrane, plastid	13.76	61.43
CDY38157	Canola	mitochondrion	35.84	60.54
CDX78975	Canola	plasma membrane	58.72	58.16
CDY50060	Canola	plasma membrane	58.4	58.03
CDY43178	Canola	plasma membrane	58.08	57.71
CDY02347	Canola	plasma membrane	57.92	57.55
CDY42565	Canola	cytosol	9.28	56.31
CDY70452	Canola	cytosol	9.28	56.31
CDX99194	Canola	cytosol	9.28	56.31
CDY22565	Canola	nucleus	9.92	54.39
CDY64650	Canola	plasma membrane	54.24	53.98
CDY43647	Canola	plasma membrane	53.92	53.66
CDY12449	Canola	cytosol	23.36	50.34
CDY10980	Canola	cytosol	13.92	48.88

Protein Annotations

Gene3D:2.10.25.10	MapMan:22.5.2.1	Gene3D:3.50.30.30	GO:A0A078CBN5	EnsemblPlants:CDX73599	ProteinID:CDX73599
ProteinID:CDX73599.1	InterPro:EGF-like_Ca-bd_dom	InterPro:EGF_Ca-bd_CS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
EnsemblPlantsGene:GSBRNA2T00109156001	InterPro:PA_domain	PFAM:PF02225	ScanProsite:PS01187	PANTHER:PTHR22765	PANTHER:PTHR22765:SF54
SMART:SM00179	SUPFAM:SSF52025	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0004EE0B7D	SEG:seg

Description

BnaC08g24040D

Coordinates

chrLK031799:-:1523824..1527797

Molecular Weight (calculated)

69285.4 Da

IEP (calculated)

6.250

GRAVY (calculated)

-0.370

Length

625 amino acids

Sequence
(BLAST)

001: MNQEKLGVFS VSFLLILSLA VGRFVVEKNN LKVTSPDSIK GIYECAIGNF GVPQYGGTLV GTVVYPKSNQ KACKSYSDFD ISFKSKAGRL PTFVLIDRGD
101: CFFTLKAWIA QQAGAAAILV ADNKAEPLIT MDTPEEDKSD ADYLQNITIP SALITKSLGD SLKSALSKGD MVNMKLDWTE SVPHPDERVE YELWTNSNDQ
201: CGTKCDTQIE FLKNFKGAAQ ILEKGGHTQF TPHYITWYCP EAFTLSKQCK SQCINHGRYC APDPEQDFTK GYDGKDVVVQ NLRQACVYRV LNETGKPWVW
301: WDYVTDFAIR CPMKDKKYTK ECADEIIKSL DIDLKKVDKC IGDPEADVEN PILKAEQESQ VGKGSRGDVT ILPTLVVNNR QYRGKLEKGA VLKAMCSGFQ
401: ESTEPAICLT EDLNTNECLE NNGGCWQDKA SNITACRDTY RGRLCECPTV QGVKFAGDGY THCKASGALH CGINNGGCWR ETRGSYTYSA CVDDHSSDCK
501: CPLGFKGDGV KSCEDVNECK EKKVCQCPDC KCKNTWGSYE CSCKNGLLYM REHDTCIGSS KVGTTKLSWS FLWVLIIGVG VAGLAGYAVY KYRIRTYMDA
601: EIRGIMAQYM PLESQPTPSG PHMDI

Best Arabidopsis Sequence Match ( AT3G52850.1 )
(BLAST)

001: MKLGLFTLSF LLILNLAMGR FVVEKNNLKV TSPDSIKGIY ECAIGNFGVP QYGGTLVGTV VYPKSNQKAC KSYSDFDISF KSKPGRLPTF VLIDRGDCYF
101: TLKAWIAQQA GAAAILVADS KAEPLITMDT PEEDKSDADY LQNITIPSAL ITKTLGDSIK SALSGGDMVN MKLDWTESVP HPDERVEYEL WTNSNDECGK
201: KCDTQIEFLK NFKGAAQILE KGGHTQFTPH YITWYCPEAF TLSKQCKSQC INHGRYCAPD PEQDFTKGYD GKDVVVQNLR QACVYRVMND TGKPWVWWDY
301: VTDFAIRCPM KEKKYTKECA DGIIKSLGID LKKVDKCIGD PEADVENPVL KAEQESQIGK GSRGDVTILP TLVVNNRQYR GKLEKGAVLK AMCSGFQEST
401: EPAICLTEDL ETNECLENNG GCWQDKAANI TACRDTFRGR LCECPTVQGV KFVGDGYTHC KASGALHCGI NNGGCWRESR GGFTYSACVD DHSKDCKCPL
501: GFKGDGVKNC EDVDECKEKT VCQCPECKCK NTWGSYECSC SNGLLYMREH DTCIGSGKVG TTKLSWSFLW ILIIGVGVAG LSGYAVYKYR IRSYMDAEIR
601: GIMAQYMPLE SQPPNTSGHH MDI

Arabidopsis Description

VSR1Vacuolar-sorting receptor 1 [Source:UniProtKB/Swiss-Prot;Acc:P93026]
SUBAcon: [plasma membrane,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.