CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G046470.1	Barley	cytosol, mitochondrion	20.0	48.28
CDY38158	Canola	cytosol, plasma membrane	92.14	42.72
Zm00001d053767_P001	Maize	mitochondrion	30.71	30.71
CDY04821	Canola	mitochondrion, plasma membrane	92.86	20.47
CDX99194	Canola	cytosol	12.86	17.48
CDY70452	Canola	cytosol	12.86	17.48
CDY42565	Canola	cytosol	12.86	17.48
CDY12449	Canola	cytosol	35.0	16.9
PGSC0003DMT400077180	Potato	cytosol	64.29	14.9
Solyc10g074980.1.1	Tomato	extracellular	65.0	14.58
PGSC0003DMT400080213	Potato	plasma membrane	64.29	14.42
Solyc09g015670.2.1	Tomato	plastid	62.14	14.01
CDX93144	Canola	extracellular, plasma membrane, vacuole	60.71	13.93
CDX73599	Canola	plasma membrane	61.43	13.76
CDY37219	Canola	extracellular, golgi, plasma membrane	60.71	13.62
CDX78128	Canola	plasma membrane	60.71	13.6
CDY65441	Canola	plasma membrane	60.71	13.47
CDX81459	Canola	plasma membrane	60.0	13.46
KRH00437	Soybean	endoplasmic reticulum, golgi, plasma membrane	59.29	13.41
CDY13344	Canola	plasma membrane	59.29	13.28
KRH48733	Soybean	extracellular, golgi, plasma membrane	58.57	13.18
KRH64888	Soybean	endoplasmic reticulum, golgi, plasma membrane	58.57	13.14
CDX67539	Canola	plasma membrane	58.57	13.12
CDX91478	Canola	plasma membrane	57.86	13.06
KRH40723	Soybean	extracellular, golgi, plasma membrane	57.86	12.98
CDY60753	Canola	plasma membrane	57.14	12.9
CDY50060	Canola	plasma membrane	49.29	10.97
CDX78975	Canola	plasma membrane	49.29	10.94
CDY02347	Canola	plasma membrane	47.86	10.65
CDY43178	Canola	plasma membrane	47.86	10.65
CDY10980	Canola	cytosol	12.86	10.11
CDY43647	Canola	plasma membrane	43.57	9.71
CDY64650	Canola	plasma membrane	42.86	9.55
CDY22565	Canola	nucleus	1.43	1.75
CDY62643	Canola	mitochondrion	0.71	1.05
CDY38157	Canola	mitochondrion	2.14	0.81

Protein Annotations

Gene3D:2.10.25.10	MapMan:22.5.2.1	GO:A0A078JA76	UniProt:A0A078JA76	EnsemblPlants:CDY62642	ProteinID:CDY62642
ProteinID:CDY62642.1	InterPro:EGF-like_Ca-bd_dom	InterPro:EGF_Ca-bd_CS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00036484001	PFAM:PF12662	ScanProsite:PS01187
PANTHER:PTHR22765	PANTHER:PTHR22765:SF57	SMART:SM00179	TMHMM:TMhelix	UniParc:UPI0004EE9491	InterPro:cEGF
SEG:seg	:	:	:	:	:

Description

BnaCnng40690DBnaCnng40690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JA76]

Coordinates

chrLK034173:-:31855..32679

Molecular Weight (calculated)

15757.8 Da

IEP (calculated)

7.528

GRAVY (calculated)

-0.410

Length

140 amino acids

Sequence
(BLAST)

001: MGRTYSACRN DHLKGCKCPP GFSGDGFKNC TDVNECEEKT VCQCRGCKCK NTWGSYECSC NGSLLYIREH DICISKDARG DASWGVIWII IMGLGAAALG
101: AYTVYKYRIR TYMDSEIRAI MAQYMPLDNH PNTQPSQLEW

Best Arabidopsis Sequence Match ( AT2G14740.1 )
(BLAST)

001: MKQLLCYLPW LLLLTLLVSP LNDARFVVEK NSLSVTSPES IKGTHDSAIG NFGIPQYGGS MAGTVVYPKE NQKSCKEFSD FSISFKSQPG ALPTFLLVDR
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKECADSVIK SLGIDSKKLD KCMGDPDADL DNPVLKEEQD AQVGKGSRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEETTEPAIC LSTDVESNEC LDNNGGCWQD KSANITACKD TFRGRVCECP TVDGVQFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GTKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YIRDHDTCIS KTGAQVRSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEIP NHVNDERA

Arabidopsis Description

VSR3VSR3 [Source:UniProtKB/TrEMBL;Acc:A0A178VT51]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.