CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

plasma membrane: 26746009

msms PMID: 26746009 doi

S Chen, Y Luo, G Ding, F Xu

National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China. Electronic address: fangsenxu@mail.hzau.edu.cn., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China; Key Laboratory of Agricultural Biotechnology of Liaoning Province, College of Biological Science and Technology, Shenyang Agricultural University, Shenyang 110866, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90517
CDX90537
CDX92459
CDX92950
CDX92952
CDY09687
CDY09707
CDY16539
CDY25483
CDY25484
CDY32227
CDY32254
CDY32255
CDY32256
CDY32258
CDY32259
CDY34441
CDY45086
CDY65601
CDY68173
CDY69151

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G14720.1	CDX90537	AT4G16190.1	23738689
AT2G14720.1	CDY09707	AT4G16190.1	23738689
AT2G14720.1	CDY32227	AT4G16190.1	23738689
AT2G14720.1	CDY34441	AT4G16190.1	23738689
AT2G14720.1	CDX90517	AT4G16500.1	23738689
AT2G14720.1	CDX92950	AT4G16500.1	23738689
AT2G14720.1	CDX92952	AT4G16500.1	23738689
AT2G14720.1	CDY09687	AT4G16500.1	23738689
AT2G14720.1	CDY25483	AT4G16500.1	23738689
AT2G14720.1	CDY25484	AT4G16500.1	23738689
AT2G14720.1	CDY32254	AT4G16500.1	23738689
AT2G14720.1	CDY32255	AT4G16500.1	23738689
AT2G14720.1	CDY32256	AT4G16500.1	23738689
AT2G14720.1	CDY32258	AT4G16500.1	23738689
AT2G14720.1	CDY32259	AT4G16500.1	23738689
AT2G14720.1	CDY65601	AT4G16500.1	23738689
AT2G14720.1	CDY68173	AT4G16500.1	23738689
AT2G14720.1	CDY69151	AT4G16500.1	23738689
AT2G14720.1	CDX92459	AT5G20500.1	23738689
AT2G14720.1	CDY16539	AT5G20500.1	23738689
AT2G14720.1	CDY45086	AT5G20500.1	23738689

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93144	Canola	extracellular, plasma membrane, vacuole	94.77	98.03
CDY37219	Canola	extracellular, golgi, plasma membrane	94.61	95.67
CDX81459	Canola	plasma membrane	94.14	95.19
AT2G14740.1	Thale cress	extracellular, plasma membrane, vacuole	94.45	94.9
AT2G14720.1	Thale cress	extracellular, plasma membrane, vacuole	94.29	94.75
KRH27575	Soybean	endoplasmic reticulum	80.98	81.37
KRG91109	Soybean	endoplasmic reticulum	81.14	81.14
KRH35666	Soybean	endoplasmic reticulum	80.82	80.82
KRH77935	Soybean	endoplasmic reticulum	81.62	80.09
VIT_03s0091g00740.t01	Wine grape	plasma membrane	79.87	79.87
PGSC0003DMT400066159	Potato	endoplasmic reticulum, plasma membrane, vacuole	79.71	79.84
Solyc01g107130.2.1	Tomato	nucleus	79.56	79.68
Zm00001d012390_P001	Maize	cytosol	11.25	78.89
Zm00001d004678_P001	Maize	cytosol, nucleus, plastid	12.04	75.25
GSMUA_Achr6P16900_001	Banana	cytosol, nucleus, plasma membrane	66.56	73.94
Os10t0346600-00	Rice	plasma membrane	73.22	73.22
GSMUA_Achr10P...	Banana	cytosol	65.77	73.06
Zm00001d014302_P003	Maize	plasma membrane	71.0	72.49
TraesCS1D01G131100.1	Wheat	golgi	71.32	71.09
TraesCS1B01G148200.1	Wheat	plasma membrane	71.16	71.04
TraesCS1A01G134600.2	Wheat	extracellular, plasma membrane, vacuole	71.32	70.53
CDX67539	Canola	plasma membrane	69.57	70.24
CDY13344	Canola	plasma membrane	69.41	70.08
CDX78128	Canola	plasma membrane	69.1	69.76
CDX73599	Canola	plasma membrane	69.1	69.76
Zm00001d014303_P002	Maize	plasma membrane	67.35	68.66
CDY62643	Canola	mitochondrion	10.3	68.42
CDX91478	Canola	plasma membrane	66.72	67.9
CDY60753	Canola	plasma membrane	66.72	67.9
HORVU1Hr1G032780.9	Barley	extracellular	67.19	66.67
CDY04821	Canola	mitochondrion, plasma membrane	66.4	65.98
CDY38158	Canola	cytosol, plasma membrane	30.27	63.24
CDY62642	Canola	cytosol, plasma membrane, plastid	13.47	60.71
CDY50060	Canola	plasma membrane	60.06	60.25
CDX78975	Canola	plasma membrane	60.22	60.22
CDY43178	Canola	plasma membrane	59.43	59.62
CDY02347	Canola	plasma membrane	59.27	59.46
CDY38157	Canola	mitochondrion	33.12	56.49
CDY42565	Canola	cytosol	9.03	55.34
CDX99194	Canola	cytosol	9.03	55.34
CDY70452	Canola	cytosol	9.03	55.34
CDY43647	Canola	plasma membrane	54.52	54.78
CDY64650	Canola	plasma membrane	54.52	54.78
CDY22565	Canola	nucleus	9.67	53.51
CDY12449	Canola	cytosol	24.09	52.41
CDY10980	Canola	cytosol	13.63	48.31

Protein Annotations

Gene3D:2.10.25.10	MapMan:22.5.2.1	Gene3D:3.50.30.30	GO:A0A078JI64	UniProt:A0A078JI64	EnsemblPlants:CDY65441
ProteinID:CDY65441	ProteinID:CDY65441.1	InterPro:EGF-like_CS	InterPro:EGF-like_Ca-bd_dom	InterPro:EGF_Ca-bd_CS	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00046597001
InterPro:PA_domain	PFAM:PF02225	PFAM:PF12662	ScanProsite:PS01186	ScanProsite:PS01187	PANTHER:PTHR22765
PANTHER:PTHR22765:SF54	SMART:SM00179	SUPFAM:SSF52025	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0004EF1168
InterPro:cEGF	SEG:seg	:	:	:	:

Description

BnaCnng47180DBnaCnng47180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JI64]

Coordinates

chrLK034788:-:3307..7176

Molecular Weight (calculated)

70096.0 Da

IEP (calculated)

5.458

GRAVY (calculated)

-0.436

Length

631 amino acids

Sequence
(BLAST)

001: MKQHKQSHLL CFLLPCLLLS IPFCSEARFV VEKNSLSVTS PESIKGTHDS AIGNFGIPQY GGSMAGTVIY PKENQKSCKE FSDFSISFKS QPGALPTFLL
101: VDRGDCFFAL KVWNAQKAGA SAVLVADNVD EPLITMDTPE EDISSAKYVE NITIPSALVT KGFGEKLKKS ISGGDMVNLN LDWREAVPHP DARVEYELWT
201: NSNDECGVKC DMLMEFVKDF KGAAQILEKG GYTQFRPHYI TWYCPHAFTL SRQCKSQCIN KGRYCAPDPE QDFSSGYDGK DVVVENLRQL CVYKVANETG
301: KPWVWWDYVT DFQIRCPMKE KKYNKECADS VIKSLGIDSR KLDKCMGDPD ADSDNPVLKE EQDAQVGKGS RGDVTILPTL VVNNRQYRGK LEKSAVLKAL
401: CSGFEETTEP AICLSTEMES NECLDNNGGC WQDKSANITA CKDTFRGRVC ECPLVDGVKF KGDGYSHCEP SGPGRCTINN GGCWHEERDG HAFSACVDKD
501: SVKCECPPGF KGDGVKKCED INECKEKKAC QCPECSCKNT WGSYECSCSG DLLYIRDHDT CISKTGSQVK SAWTAVWLIV LSLGLAAGGA YLVYKHRLRQ
601: YMDSEIRAIM AQYMPLDNQP EVPNHVNDER A

Best Arabidopsis Sequence Match ( AT2G14740.1 )
(BLAST)

001: MKQLLCYLPW LLLLTLLVSP LNDARFVVEK NSLSVTSPES IKGTHDSAIG NFGIPQYGGS MAGTVVYPKE NQKSCKEFSD FSISFKSQPG ALPTFLLVDR
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKECADSVIK SLGIDSKKLD KCMGDPDADL DNPVLKEEQD AQVGKGSRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEETTEPAIC LSTDVESNEC LDNNGGCWQD KSANITACKD TFRGRVCECP TVDGVQFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GTKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YIRDHDTCIS KTGAQVRSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEIP NHVNDERA

Arabidopsis Description

VSR3VSR3 [Source:UniProtKB/TrEMBL;Acc:A0A178VT51]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.