Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 7
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G34940.1 | CDX89318 | AT4G26630.1 | 25387881 |
| AT2G34940.1 | CDX94304 | AT4G26630.1 | 25387881 |
| AT2G34940.1 | CDX97358 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY64650 | Canola | plasma membrane | 98.09 | 98.09 |
| Bra021940.1-P | Field mustard | plasma membrane | 97.45 | 97.61 |
| AT2G34940.1 | Thale cress | plasma membrane | 80.57 | 81.88 |
| CDY43178 | Canola | plasma membrane | 72.13 | 72.02 |
| CDY02347 | Canola | plasma membrane | 72.13 | 72.02 |
| CDY12449 | Canola | cytosol | 29.46 | 63.79 |
| CDY62643 | Canola | mitochondrion | 9.24 | 61.05 |
| CDY50060 | Canola | plasma membrane | 61.15 | 61.05 |
| CDX78975 | Canola | plasma membrane | 60.35 | 60.06 |
| TraesCS7A01G281400.1 | Wheat | cytosol, nucleus, plastid | 9.39 | 59.6 |
| GSMUA_Achr3P23680_001 | Banana | plasma membrane | 51.43 | 57.37 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 53.66 | 57.31 |
| Os06t0664300-01 | Rice | plasma membrane | 58.12 | 57.3 |
| Zm00001d046945_P001 | Maize | plasma membrane | 56.85 | 56.76 |
| CDY37219 | Canola | extracellular, golgi, plasma membrane | 55.73 | 56.09 |
| TraesCS7D01G145700.2 | Wheat | cytosol | 26.75 | 56.0 |
| CDX93144 | Canola | extracellular, plasma membrane, vacuole | 54.3 | 55.9 |
| CDX81459 | Canola | plasma membrane | 55.41 | 55.77 |
| CDY42565 | Canola | cytosol | 9.08 | 55.34 |
| CDX99194 | Canola | cytosol | 9.08 | 55.34 |
| CDY70452 | Canola | cytosol | 9.08 | 55.34 |
| TraesCS7D01G471300.1 | Wheat | golgi | 55.41 | 55.24 |
| TraesCS7A01G483700.1 | Wheat | golgi, plasma membrane | 55.1 | 55.18 |
| TraesCS7B01G387100.1 | Wheat | extracellular, plasma membrane | 55.1 | 54.92 |
| CDY65441 | Canola | plasma membrane | 54.78 | 54.52 |
| CDX91478 | Canola | plasma membrane | 53.82 | 54.52 |
| CDY13344 | Canola | plasma membrane | 53.98 | 54.24 |
| CDX78128 | Canola | plasma membrane | 53.98 | 54.24 |
| CDY60753 | Canola | plasma membrane | 53.5 | 54.19 |
| CDX67539 | Canola | plasma membrane | 53.82 | 54.08 |
| CDX73599 | Canola | plasma membrane | 53.66 | 53.92 |
| Os04t0611400-01 | Rice | plasma membrane | 53.5 | 53.16 |
| TraesCS2A01G425800.2 | Wheat | mitochondrion | 54.14 | 53.04 |
| TraesCS2B01G446100.1 | Wheat | plasma membrane | 54.14 | 52.96 |
| KXG27024 | Sorghum | plasma membrane | 51.59 | 52.94 |
| HORVU7Hr1G109180.2 | Barley | mitochondrion, plasma membrane, vacuole | 55.1 | 52.74 |
| TraesCS2D01G423700.1 | Wheat | golgi | 53.66 | 52.57 |
| CDY04821 | Canola | mitochondrion, plasma membrane | 50.64 | 50.08 |
| CDY38158 | Canola | cytosol, plasma membrane | 23.57 | 49.01 |
| KXG20551 | Sorghum | plasma membrane, plastid | 57.32 | 47.81 |
| CDY10980 | Canola | cytosol | 12.58 | 44.38 |
| CDY62642 | Canola | cytosol, plasma membrane, plastid | 9.71 | 43.57 |
| TraesCS6A01G310600.1 | Wheat | cytosol | 25.8 | 42.74 |
| CDY38157 | Canola | mitochondrion | 24.04 | 40.81 |
| TraesCS7A01G436000.1 | Wheat | mitochondrion | 13.69 | 40.76 |
| CDY22565 | Canola | nucleus | 7.17 | 39.47 |
| GSMUA_Achr7P03630_001 | Banana | plasma membrane | 52.55 | 32.61 |
| HORVU2Hr1G099640.3 | Barley | extracellular | 16.56 | 16.17 |
Protein Annotations
| Gene3D:2.10.25.10 | MapMan:22.5.2.1 | Gene3D:3.50.30.30 | GO:A0A078I0M6 | UniProt:A0A078I0M6 | EnsemblPlants:CDY43647 |
| ProteinID:CDY43647 | ProteinID:CDY43647.1 | InterPro:EGF-like_Ca-bd_dom | InterPro:EGF_Ca-bd_CS | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005509 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00076992001 | InterPro:PA_domain |
| PFAM:PF02225 | ScanProsite:PS01187 | PANTHER:PTHR22765 | PANTHER:PTHR22765:SF56 | SMART:SM00179 | SUPFAM:SSF52025 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EEE3BF | SEG:seg | : | : |
Description
BnaA04g20440DBnaA04g20440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I0M6]
Coordinates
chrLK032564:-:27483..30827
Molecular Weight (calculated)
70220.5 Da
IEP (calculated)
5.250
GRAVY (calculated)
-0.305
Length
628 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPSNKETVL TLFLALTMVV NVVSTRFFVE KSSVTVLNSW EMKAKHDAAI ANFGIPSHGG FMIGSAVYAG QGAYGCDPLN ETFKPKSPYP TILIIDRGVC
101: NYALKIWNGQ QAGAAAVLLE DNIVEPLIAM DSPEESQHED PDLIEKIKIP SALILHSFGG SLKKALNKGE EIILKIDWSE TIPNPDERVE YELWANTNDE
201: CGVHCNEQMS FIKNFKGTAQ ILEKGGHALF TPHYISWFCP QELRLSRQCK SQCINQGRYC APDPELDYED GYNGKDVVYE NLRQLCVHKV AKGKNSSWVW
301: WDYVTDFNIR CSMKEKKYSK ECAQTVVESL GLSLEKIKKC IGDIDADVEN EVLKAEQAFQ LGQEKRGVVT IFPTLIINNS QYRGKLERTS VLKAICSGYK
401: EGTEPLICLS TDIETDECLV ANGGCWQDKI SNITACKDTF RGRVCECPVV NGVQYKGDGY ASCKPYGPAR CSMNEGGCWS ETRNGLNFSA CLNSETSGCR
501: CPLGFHGDGL KCEADIDECK EKSACQCDDC KCKNNWGGYE CKCSNNSLYL KEQDTCIERI SRSRSRWFFI IVVITAIAGI SLSSYIFYKY HIQAYMDSEI
601: VSVMSQYIPL DSRNIHQDSN QIENCNLL
101: NYALKIWNGQ QAGAAAVLLE DNIVEPLIAM DSPEESQHED PDLIEKIKIP SALILHSFGG SLKKALNKGE EIILKIDWSE TIPNPDERVE YELWANTNDE
201: CGVHCNEQMS FIKNFKGTAQ ILEKGGHALF TPHYISWFCP QELRLSRQCK SQCINQGRYC APDPELDYED GYNGKDVVYE NLRQLCVHKV AKGKNSSWVW
301: WDYVTDFNIR CSMKEKKYSK ECAQTVVESL GLSLEKIKKC IGDIDADVEN EVLKAEQAFQ LGQEKRGVVT IFPTLIINNS QYRGKLERTS VLKAICSGYK
401: EGTEPLICLS TDIETDECLV ANGGCWQDKI SNITACKDTF RGRVCECPVV NGVQYKGDGY ASCKPYGPAR CSMNEGGCWS ETRNGLNFSA CLNSETSGCR
501: CPLGFHGDGL KCEADIDECK EKSACQCDDC KCKNNWGGYE CKCSNNSLYL KEQDTCIERI SRSRSRWFFI IVVITAIAGI SLSSYIFYKY HIQAYMDSEI
601: VSVMSQYIPL DSRNIHQDSN QIENCNLL
001: MSPSNKGTVL ALILALTMVV VNGFSSRFFV EKSSLTVLNS WEMGAKHDAA IANFGLPKYG GFMIGSVVYA GQDAYGCNSF NKTFNTKSPY PKILLIDRGV
101: CNFALKIWNG QQSGAAAVLL ADNIVEPLIT MDTPQDEDPD FIDKVKIPSA LILRSFGDSL KKALKRGEEV ILKMDWSESI PNPDERVEYE LWANTNDECG
201: VHCDKQIDFI KNFKGMAQIL EKGGYTLFRP HYISWVCPKE LLLSKQCRTQ CINQGRYCAL DTKQEFEDGY NGKDVVYENL RQLCVHKVAK EKNTSWVWWD
301: YVTDFNIRCS MKEKKYSREC AETIVESLGL SLEKIKKCIG DPDADVENEV LKAEEAFQLG QENRGIVTIF PTLMINNAQY RGKLERTAVL KAICSGFKER
401: TEPSICLNSD IETNECLIEN GGCWQDKRSN VTACKDTFRG RVCECPVVDG VQYKGDGYTS CKPYGPARCS MNNGDCWSET RKGLTFSSCS DSETSGCRCP
501: LGFLGDGLKC EDIDECKEKS ACKCDGCKCK NNWGGYECKC SNNSIYMKEE DTCIERRSGS RSRGLFTIVV LTAIAGISLG AYIFYKYHLQ SYMDSEIVSI
601: MSQYIPLDSQ SINQDSFK
101: CNFALKIWNG QQSGAAAVLL ADNIVEPLIT MDTPQDEDPD FIDKVKIPSA LILRSFGDSL KKALKRGEEV ILKMDWSESI PNPDERVEYE LWANTNDECG
201: VHCDKQIDFI KNFKGMAQIL EKGGYTLFRP HYISWVCPKE LLLSKQCRTQ CINQGRYCAL DTKQEFEDGY NGKDVVYENL RQLCVHKVAK EKNTSWVWWD
301: YVTDFNIRCS MKEKKYSREC AETIVESLGL SLEKIKKCIG DPDADVENEV LKAEEAFQLG QENRGIVTIF PTLMINNAQY RGKLERTAVL KAICSGFKER
401: TEPSICLNSD IETNECLIEN GGCWQDKRSN VTACKDTFRG RVCECPVVDG VQYKGDGYTS CKPYGPARCS MNNGDCWSET RKGLTFSSCS DSETSGCRCP
501: LGFLGDGLKC EDIDECKEKS ACKCDGCKCK NNWGGYECKC SNNSIYMKEE DTCIERRSGS RSRGLFTIVV LTAIAGISLG AYIFYKYHLQ SYMDSEIVSI
601: MSQYIPLDSQ SINQDSFK
Arabidopsis Description
VSR5VSR5 [Source:UniProtKB/TrEMBL;Acc:A0A178VYD0]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.