CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	golgi, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039898.1-P	Field mustard	cytosol	91.08	87.99
CDY22565	Canola	nucleus	20.0	64.91
CDY04821	Canola	mitochondrion, plasma membrane	81.35	47.4
AT2G30290.2	Thale cress	endoplasmic reticulum, golgi, plasma membrane	75.95	43.84
PGSC0003DMT400077180	Potato	cytosol	60.81	37.25
PGSC0003DMT400080213	Potato	plasma membrane	62.7	37.18
Solyc10g074980.1.1	Tomato	extracellular	62.43	37.02
Solyc09g015670.2.1	Tomato	plastid	60.81	36.23
CDX78128	Canola	plasma membrane	60.81	36.0
CDY13344	Canola	plasma membrane	60.54	35.84
CDX73599	Canola	plasma membrane	60.54	35.84
KRH00437	Soybean	endoplasmic reticulum, golgi, plasma membrane	59.73	35.7
CDX67539	Canola	plasma membrane	60.27	35.68
KRH48733	Soybean	extracellular, golgi, plasma membrane	59.46	35.37
KRH40723	Soybean	extracellular, golgi, plasma membrane	59.46	35.26
KRH64888	Soybean	endoplasmic reticulum, golgi, plasma membrane	59.46	35.26
CDX81459	Canola	plasma membrane	58.11	34.46
CDY37219	Canola	extracellular, golgi, plasma membrane	58.11	34.46
CDX91478	Canola	plasma membrane	57.57	34.35
CDY60753	Canola	plasma membrane	57.3	34.19
CDY65441	Canola	plasma membrane	56.49	33.12
CDX93144	Canola	extracellular, plasma membrane, vacuole	52.43	31.8
CDY50060	Canola	plasma membrane	47.3	27.82
CDX78975	Canola	plasma membrane	47.3	27.73
CDY43178	Canola	plasma membrane	46.49	27.34
CDY02347	Canola	plasma membrane	46.22	27.19
CDY64650	Canola	plasma membrane	41.08	24.2
CDY43647	Canola	plasma membrane	40.81	24.04
HORVU5Hr1G046470.1	Barley	cytosol, mitochondrion	1.08	6.9
CDY38158	Canola	cytosol, plasma membrane	5.41	6.62
Zm00001d053767_P001	Maize	mitochondrion	2.43	6.43
CDY62643	Canola	mitochondrion	1.35	5.26
CDY10980	Canola	cytosol	1.62	3.37
CDY62642	Canola	cytosol, plasma membrane, plastid	0.81	2.14
CDY12449	Canola	cytosol	1.62	2.07
CDY70452	Canola	cytosol	0.54	1.94
CDY42565	Canola	cytosol	0.54	1.94
CDX99194	Canola	cytosol	0.54	1.94

Protein Annotations

EnsemblPlants:CDY38157	EnsemblPlantsGene:GSBRNA2T00065457001	Gene3D:3.50.30.30	GO:A0A078HJX0	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:PA_domain	PANTHER:PTHR22765	PANTHER:PTHR22765:SF54	PFAM:PF02225	ProteinID:CDY38157
ProteinID:CDY38157.1	SUPFAM:SSF52025	TMHMM:TMhelix	UniParc:UPI0004EE4470	UniProt:A0A078HJX0	MapMan:22.5.2.1

Description

BnaA07g02260DBnaA07g02260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJX0]

Coordinates

chrLK032417:+:201929..203553

Molecular Weight (calculated)

42090.7 Da

IEP (calculated)

8.566

GRAVY (calculated)

-0.195

Length

370 amino acids

Sequence
(BLAST)

001: MIFSYKILVC SQKTKMVYIG KHGSGMMMMK NVRLFVMGWV MWWGSCMGMF VVEKNSLRVT SPESIRGIYE CALGNFGVPQ YGGSMSGSVV YPKANQKACK
101: NFEDFDISFI SRVAGLPTFV LVDRGDCYFT LKAWNAQRAG AATILVADNR PEPLITMDAP EDETADAEYL LNITIPSALL SRSLGSTIKT AIDQGVPVRI
201: SLDWREIFFQ ALPHPNDRVA YELWTNSNDE CGSKCDAQIR FLKRFKGAAQ ILEKGAQTLL GGYTRFTPHY ITWYCPEAFL ASRQCKSQCI NGGRYCAPDP
301: EQDFSRGYNG RDVIIQNLRQ ACFFRVMNES GKPWIWWDYV TDFAIRCPIT HETRKVQQTM RRSSYSLPWY

Best Arabidopsis Sequence Match ( AT2G14720.1 )
(BLAST)

001: MKQLLCYLPW LLLLSLVVSP FNEARFVVEK NSLSVTSPES IKGTHDSAIG NFGIPQYGGS MAGTVVYPKE NQKSCKEFSD FSISFKSQPG ALPTFLLVDR
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKDCAESVIK SLGIDSRKID KCMGDPDADL DNPVLKEEQD AQVGKGTRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEESTEPAIC LSTDMETNEC LDNNGGCWQD KSANITACKD TFRGKVCVCP IVDGVRFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GVKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YMRDHDTCIS KTGSQVKSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEVP NHTNDERA

Arabidopsis Description

VSR4Vacuolar-sorting receptor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q56ZQ3]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.