Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028917.1-P | Field mustard | cytosol, mitochondrion, plasma membrane, plastid | 79.56 | 92.39 |
| CDY04821 | Canola | mitochondrion, plasma membrane | 89.39 | 90.24 |
| CDY38158 | Canola | cytosol, plasma membrane | 40.41 | 85.76 |
| CDY38157 | Canola | mitochondrion | 43.84 | 75.95 |
| PGSC0003DMT400077180 | Potato | cytosol | 68.95 | 73.18 |
| PGSC0003DMT400080213 | Potato | plasma membrane | 70.83 | 72.76 |
| Solyc10g074980.1.1 | Tomato | extracellular | 70.2 | 72.12 |
| Solyc09g015670.2.1 | Tomato | plastid | 68.33 | 70.53 |
| AT3G52850.1 | Thale cress | extracellular, golgi, plasma membrane | 68.49 | 70.47 |
| Bra039898.1-P | Field mustard | cytosol | 41.81 | 69.97 |
| KRH00437 | Soybean | endoplasmic reticulum, golgi, plasma membrane | 66.61 | 68.98 |
| CDX99194 | Canola | cytosol | 11.08 | 68.93 |
| CDY70452 | Canola | cytosol | 11.08 | 68.93 |
| CDY42565 | Canola | cytosol | 11.08 | 68.93 |
| Bra039875.1-P | Field mustard | cytosol | 11.08 | 68.93 |
| AT2G14740.1 | Thale cress | extracellular, plasma membrane, vacuole | 66.15 | 67.52 |
| KRH64888 | Soybean | endoplasmic reticulum, golgi, plasma membrane | 65.68 | 67.47 |
| KRH40723 | Soybean | extracellular, golgi, plasma membrane | 65.68 | 67.47 |
| KRH48733 | Soybean | extracellular, golgi, plasma membrane | 65.21 | 67.2 |
| AT2G14720.1 | Thale cress | extracellular, plasma membrane, vacuole | 65.52 | 66.88 |
| Bra009645.1-P | Field mustard | cytosol, mitochondrion, peroxisome, plastid | 17.94 | 64.61 |
| CDY10980 | Canola | cytosol | 16.54 | 59.55 |
| AT1G30900.1 | Thale cress | extracellular, plasma membrane, vacuole | 53.51 | 54.36 |
| AT4G20110.2 | Thale cress | plasma membrane | 53.04 | 54.14 |
| AT2G34940.1 | Thale cress | plasma membrane | 50.08 | 51.94 |
| HORVU5Hr1G046470.1 | Barley | cytosol, mitochondrion | 4.52 | 50.0 |
| Zm00001d053767_P001 | Maize | mitochondrion | 8.89 | 40.71 |
Protein Annotations
| Gene3D:2.10.25.10 | MapMan:22.5.2.1 | Gene3D:3.50.30.30 | EntrezGene:817579 | ProteinID:AAC16948.1 | ProteinID:AEC08366.1 |
| ProteinID:AEC08367.1 | ArrayExpress:AT2G30290 | EnsemblPlantsGene:AT2G30290 | RefSeq:AT2G30290 | TAIR:AT2G30290 | RefSeq:AT2G30290-TAIR-G |
| EnsemblPlants:AT2G30290.2 | TAIR:AT2G30290.2 | Unigene:At.52975 | EMBL:DQ446580 | InterPro:EGF-like_Ca-bd_dom | InterPro:EGF_Ca-bd_CS |
| UniProt:F4IMR9 | GO:GO:0000139 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005794 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0030665 | GO:GO:0031410 |
| GO:GO:0031902 | RefSeq:NP_001189637.1 | RefSeq:NP_180588.1 | InterPro:PA_domain | PFAM:PF02225 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS01187 | PFscan:PS51257 | PANTHER:PTHR22765 | PANTHER:PTHR22765:SF54 |
| SMART:SM00179 | SUPFAM:SSF52025 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0001E92D0B | Symbol:VSR2 |
| SEG:seg | : | : | : | : | : |
Description
VSR2VACUOLAR SORTING RECEPTOR 2 [Source:UniProtKB/TrEMBL;Acc:F4IMR9]
Coordinates
chr2:-:12912519..12915912
Molecular Weight (calculated)
71750.2 Da
IEP (calculated)
6.930
GRAVY (calculated)
-0.362
Length
641 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTTNVWLVV IVWVTVGWSS CTGRFVVEKN NLRVTSPESI RGVYECALGN FGVPQYGGSM SGAVVYPKTN QKACKNFDDF EISFRSRVAG LPTFVLVDRG
101: DCYFTLKAWN AQRAGAATIL VADNRPEQLI TMDAPEDETS DADYLQNITI PSALVSRSLG SAIKTAIAHG DPVHISLDWR EALPHPNDRV AYELWTNSND
201: ECGSKCDAQI RFLKRFKGAA QILEKGGYTR FTPHYITWYC PEAFLASRQC KTQCINGGRY CAPDPEQDFS RGYNGKDVII QNLRQACFFR VTNESGKPWL
301: WWDYVTDFAI RCPMKEEKYN KKCADQVIQS LGVDVKKIDK CIGDIDANAE NPVLKEEQVA QVGKGSRGDV TILPTIVINN RQYRGKLQRS AVLKALCSGF
401: RETTEPPICL TEDIETNECL QNNGGCWEDK TTNITACRDT FRGRVCQCPI VQGVKFLGDG YTHCEASGAL RCGINNGGCW KQTQMGKTYS ACRDDHSKGC
501: KCPPGFIGDG LKECKDVNEC EEKTACQCRD CKCKNTWGSY ECSCSGSLLY IREHDICINR DARGDFSWGV IWIIIMGLGA AALGAYTVYK YRIRTYMDSE
601: IRAIMAQYMP LDNNPNTQLS SQLELENAKY VESDFNLFLL S
101: DCYFTLKAWN AQRAGAATIL VADNRPEQLI TMDAPEDETS DADYLQNITI PSALVSRSLG SAIKTAIAHG DPVHISLDWR EALPHPNDRV AYELWTNSND
201: ECGSKCDAQI RFLKRFKGAA QILEKGGYTR FTPHYITWYC PEAFLASRQC KTQCINGGRY CAPDPEQDFS RGYNGKDVII QNLRQACFFR VTNESGKPWL
301: WWDYVTDFAI RCPMKEEKYN KKCADQVIQS LGVDVKKIDK CIGDIDANAE NPVLKEEQVA QVGKGSRGDV TILPTIVINN RQYRGKLQRS AVLKALCSGF
401: RETTEPPICL TEDIETNECL QNNGGCWEDK TTNITACRDT FRGRVCQCPI VQGVKFLGDG YTHCEASGAL RCGINNGGCW KQTQMGKTYS ACRDDHSKGC
501: KCPPGFIGDG LKECKDVNEC EEKTACQCRD CKCKNTWGSY ECSCSGSLLY IREHDICINR DARGDFSWGV IWIIIMGLGA AALGAYTVYK YRIRTYMDSE
601: IRAIMAQYMP LDNNPNTQLS SQLELENAKY VESDFNLFLL S
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.