Factsheet for Bra039875.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	plasma membrane
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70452	Canola	cytosol	100.0	100.0
CDY42565	Canola	cytosol	100.0	100.0
CDX99194	Canola	cytosol	100.0	100.0
CDY10980	Canola	cytosol	86.41	50.0
Bra009645.1-P	Field mustard	cytosol, mitochondrion, peroxisome, plastid	30.1	17.42
Bra039877.1-P	Field mustard	cytosol	49.51	15.45
Bra028917.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	68.93	12.86
AT2G30290.2	Thale cress	endoplasmic reticulum, golgi, plasma membrane	68.93	11.08
KRH48733	Soybean	extracellular, golgi, plasma membrane	59.22	9.81
KRH64888	Soybean	endoplasmic reticulum, golgi, plasma membrane	59.22	9.78
PGSC0003DMT400077180	Potato	cytosol	57.28	9.77
KRH00437	Soybean	endoplasmic reticulum, golgi, plasma membrane	58.25	9.69
PGSC0003DMT400080213	Potato	plasma membrane	58.25	9.62
Solyc10g074980.1.1	Tomato	extracellular	57.28	9.46
KRH40723	Soybean	extracellular, golgi, plasma membrane	57.28	9.46
Bra028535.1-P	Field mustard	plasma membrane	57.28	9.44
Bra023151.1-P	Field mustard	plasma membrane	57.28	9.38
Solyc09g015670.2.1	Tomato	plastid	56.31	9.34
Bra006952.1-P	Field mustard	plasma membrane	57.28	9.23
Bra013445.1-P	Field mustard	plasma membrane	56.31	9.19
Bra021940.1-P	Field mustard	plasma membrane	55.34	9.09
Bra013121.1-P	Field mustard	extracellular, plasma membrane, vacuole	55.34	9.03
Bra005096.1-P	Field mustard	plasma membrane	54.37	9.03
Bra039817.1-P	Field mustard	extracellular, golgi, plasma membrane	54.37	8.97
Zm00001d053767_P001	Maize	mitochondrion	9.71	7.14
HORVU5Hr1G046470.1	Barley	cytosol, mitochondrion	1.94	3.45
Bra039898.1-P	Field mustard	cytosol	1.94	0.52

Protein Annotations

EnsemblPlants:Bra039875.1	EnsemblPlants:Bra039875.1-P	EnsemblPlantsGene:Bra039875	PANTHER:PTHR22765	PANTHER:PTHR22765:SF54	UniParc:UPI0002545822
UniProt:M4FFK1	MapMan:35.1	:	:	:	:

Description

AT2G30290 (E=2e-026) | vacuolar sorting receptor, putative

Coordinates

chrA08:+:6127782..6128597

Molecular Weight (calculated)

11416.6 Da

IEP (calculated)

6.726

GRAVY (calculated)

-0.487

Length

103 amino acids

Sequence
(BLAST)

001: MINNKQPRGE RSKDVLLERS VVLKDLCSGF SETTEPHICL NKDIETNECL QNNGGCWEDK TINITACRVF VAAVQYDHSK GCKCPPGLKG VGLKYTVCES
101: HDS

Best Arabidopsis Sequence Match ( AT2G30290.1 )
(BLAST)

001: MRTTNVWLVV IVWVTVGWSS CTGRFVVEKN NLRVTSPESI RGVYECALGN FGVPQYGGSM SGAVVYPKTN QKACKNFDDF EISFRSRVAG LPTFVLVDRG
101: DCYFTLKAWN AQRAGAATIL VADNRPEQLI TMDAPEDETS DADYLQNITI PSALVSRSLG SAIKTAIAHG DPVHISLDWR EALPHPNDRV AYELWTNSND
201: ECGSKCDAQI RFLKRFKGAA QILEKGGYTR FTPHYITWYC PEAFLASRQC KTQCINGGRY CAPDPEQDFS RGYNGKDVII QNLRQACFFR VTNESGKPWL
301: WWDYVTDFAI RCPMKEEKYN KKCADQVIQS LGVDVKKIDK CIGDIDANAE NPVLKEEQVA QVGKGSRGDV TILPTIVINN RQYRGKLQRS AVLKALCSGF
401: RETTEPPICL TEDIETNECL QNNGGCWEDK TTNITACRDT FRGRVCQCPI VQGVKFLGDG YTHCEASGAL RCGINNGGCW KQTQMGKTYS ACRDDHSKGC
501: KCPPGFIGDG LKECKDVNEC EEKTACQCRD CKCKNTWGSY ECSCSGSLLY IREHDICINR DARGDFSWGV IWIIIMGLGA AALGAYTVYK YRIRTYMDSE
601: IRAIMAQYMP LDNNPNTQLS SQLEL

Arabidopsis Description

VSR2VACUOLAR SORTING RECEPTOR 2 [Source:UniProtKB/TrEMBL;Acc:F4IMR9]
SUBAcon: [golgi,plasma membrane,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.