Factsheet for Bra006952.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 8
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	plasma membrane
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001391.1-P
Bra002306.1-P
Bra008294.1-P
Bra012733.1-P
Bra020106.1-P
Bra025661.1-P
Bra033545.1-P
Bra034166.1-P
Bra034864.1-P
Bra040987.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52850.1	Bra008294.1-P	AT1G77140.1	10888666
AT3G52850.1	Bra001391.1-P	AT3G11130.1	16905657
AT3G52850.1	Bra034166.1-P	AT3G11130.1	16905657
AT3G52850.1	Bra034864.1-P	AT3G11130.1	16905657
AT3G52850.1	Bra012733.1-P	AT4G16190.1	23738689
AT3G52850.1	Bra033545.1-P	AT4G16190.1	23738689
AT3G52850.1	Bra002306.1-P	AT5G20500.1	23738689
AT3G52850.1	Bra020106.1-P	AT5G20500.1	23738689
AT3G52850.1	Bra025661.1-P	AT5G39510.1	10397763
AT3G52850.1	Bra040987.1-P	AT5G39510.1	10397763

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78128	Canola	plasma membrane	96.71	98.88
Bra028535.1-P	Field mustard	plasma membrane	92.18	94.24
AT3G52850.1	Thale cress	extracellular, golgi, plasma membrane	90.45	92.78
Bra005096.1-P	Field mustard	plasma membrane	77.78	80.16
VIT_08s0058g01360.t01	Wine grape	plasma membrane	74.02	75.8
Bra028917.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	60.88	70.47
Bra039817.1-P	Field mustard	extracellular, golgi, plasma membrane	67.61	69.23
Bra013121.1-P	Field mustard	extracellular, plasma membrane, vacuole	68.08	68.94
Bra013445.1-P	Field mustard	plasma membrane	57.75	58.48
Bra023151.1-P	Field mustard	plasma membrane	56.81	57.71
Bra039875.1-P	Field mustard	cytosol	9.23	57.28
Bra039877.1-P	Field mustard	cytosol	29.26	56.67
Bra039898.1-P	Field mustard	cytosol	33.49	55.87
Bra021940.1-P	Field mustard	plasma membrane	53.36	54.39
Bra009645.1-P	Field mustard	cytosol, mitochondrion, peroxisome, plastid	14.55	52.25

Protein Annotations

Gene3D:2.10.25.10	MapMan:22.5.2.1	Gene3D:3.50.30.30	EnsemblPlantsGene:Bra006952	EnsemblPlants:Bra006952.1	EnsemblPlants:Bra006952.1-P
InterPro:EGF-like_Ca-bd_dom	InterPro:EGF_Ca-bd_CS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	UniProt:M4CRW0	InterPro:PA_domain	PFAM:PF02225	ScanProsite:PS01187
PANTHER:PTHR22765	PANTHER:PTHR22765:SF54	SMART:SM00179	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002542EA8
SEG:seg	:	:	:	:	:

Description

AT3G52850 (E=2e-292) VSR1, BP-80, ATELP, VSR-1, BP80, BP80B, ATELP1, ATVSR1 | VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1); amino-terminal vacuolar sorting propeptide binding

Coordinates

chrA09:+:26453684..26457296

Molecular Weight (calculated)

70764.1 Da

IEP (calculated)

6.087

GRAVY (calculated)

-0.345

Length

639 amino acids

Sequence
(BLAST)

001: MNQEKLGVFS VSFLLILSVA VGRFVVEKNN LKVTSPDSIK GIYECAIGNF GVPQYGGTLV GTVVYPKSNQ KACKSYSDFD ITFKSKAGRL PTFVLIDRGG
101: SVSSYLNWLV DQLDCFFTLK AWIAQQAGAA AILVADNKAE PLITMDTPEE DKSDADYLQN ITIPSALIAK SLGDSLKSAL SKGDMVNMKL DWTESVPHPD
201: ERVEYELWTN SNDQCGKKCD TQIEFLKNFK GAAQILEKGG HTQFTPHYIT WYCPEAFTLS KQCKSQCINH GRYCAPDPEQ DFTKGYDGKD VVVQNLRQAC
301: VYRVLNETGK PWVWWDYVTD FAIRCPMKDK KYTKECADEI IKSLDIDLKK VDKCIGDPDA DVENPILKAE QESQVGKGSR GDVTILPTLV VNNRQYRGKL
401: EKGAVLKAMC SGFQESTEPA ICLTEDLNTN ECLENNGGCW QDKASNITAC RDTYRGRLCE CPTVQGVKFA GDGYTHCKAS GALHCGINNG GCWRETRGSY
501: TYSACVDDHS SDCKCPLGFK GDGVKSCEDV NECKEKTVCQ CADCKCKNTW GSYECSCKNG LLYMREHDTC IGSSKVGTTK LSWSFLWVLI IGVGVAGLAG
601: YAVYKYRIRS YMDAEIRGIM AQYMPLESQP TPSGPHMDI

Best Arabidopsis Sequence Match ( AT3G52850.1 )
(BLAST)

001: MKLGLFTLSF LLILNLAMGR FVVEKNNLKV TSPDSIKGIY ECAIGNFGVP QYGGTLVGTV VYPKSNQKAC KSYSDFDISF KSKPGRLPTF VLIDRGDCYF
101: TLKAWIAQQA GAAAILVADS KAEPLITMDT PEEDKSDADY LQNITIPSAL ITKTLGDSIK SALSGGDMVN MKLDWTESVP HPDERVEYEL WTNSNDECGK
201: KCDTQIEFLK NFKGAAQILE KGGHTQFTPH YITWYCPEAF TLSKQCKSQC INHGRYCAPD PEQDFTKGYD GKDVVVQNLR QACVYRVMND TGKPWVWWDY
301: VTDFAIRCPM KEKKYTKECA DGIIKSLGID LKKVDKCIGD PEADVENPVL KAEQESQIGK GSRGDVTILP TLVVNNRQYR GKLEKGAVLK AMCSGFQEST
401: EPAICLTEDL ETNECLENNG GCWQDKAANI TACRDTFRGR LCECPTVQGV KFVGDGYTHC KASGALHCGI NNGGCWRESR GGFTYSACVD DHSKDCKCPL
501: GFKGDGVKNC EDVDECKEKT VCQCPECKCK NTWGSYECSC SNGLLYMREH DTCIGSGKVG TTKLSWSFLW ILIIGVGVAG LSGYAVYKYR IRSYMDAEIR
601: GIMAQYMPLE SQPPNTSGHH MDI

Arabidopsis Description

VSR1Vacuolar-sorting receptor 1 [Source:UniProtKB/Swiss-Prot;Acc:P93026]
SUBAcon: [plasma membrane,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.