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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, golgi, extracellular

Predictor Summary:
  • endoplasmic reticulum 5
  • golgi 6
  • extracellular 6
  • vacuole 4
  • plasma membrane 5
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra028535.1-P Field mustard plasma membrane 93.58 93.28
CDY13344 Canola plasma membrane 93.42 93.12
CDX67539 Canola plasma membrane 93.26 92.96
CDX78128 Canola plasma membrane 93.26 92.96
CDX73599 Canola plasma membrane 93.1 92.8
Bra006952.1-P Field mustard plasma membrane 92.78 90.45
VIT_08s0058g01360.t01 Wine grape plasma membrane 76.56 76.44
AT2G14740.1 Thale cress extracellular, plasma membrane, vacuole 71.75 71.18
AT2G14720.1 Thale cress extracellular, plasma membrane, vacuole 71.43 70.86
AT2G30290.2 Thale cress endoplasmic reticulum, golgi, plasma membrane 70.47 68.49
AT4G20110.2 Thale cress plasma membrane 59.39 58.92
AT1G30900.1 Thale cress extracellular, plasma membrane, vacuole 57.78 57.05
AT2G34940.1 Thale cress plasma membrane 55.38 55.83
Protein Annotations
Gene3D:2.10.25.10MapMan:22.5.2.1Gene3D:3.50.30.30PDB:4TJVPDB:4TJXEntrezGene:824451
ProteinID:AEE79000.1EMBL:AL132969ArrayExpress:AT3G52850EnsemblPlantsGene:AT3G52850RefSeq:AT3G52850TAIR:AT3G52850
RefSeq:AT3G52850-TAIR-GEnsemblPlants:AT3G52850.1TAIR:AT3G52850.1EMBL:AY048289Unigene:At.24701InterPro:EGF-like_Ca-bd_dom
InterPro:EGF_Ca-bd_CSGO:GO:0000139GO:GO:0003674GO:GO:0005488GO:GO:0005509GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005768GO:GO:0005770
GO:GO:0005783GO:GO:0005794GO:GO:0005802GO:GO:0005886GO:GO:0006623GO:GO:0006810
GO:GO:0006896GO:GO:0007034GO:GO:0008150GO:GO:0009940GO:GO:0015031GO:GO:0016020
GO:GO:0016021GO:GO:0030665GO:GO:0031410GO:GO:0031902RefSeq:NP_190853.1UniProt:P93026
InterPro:PA_domainPFAM:PF02225PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293
PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0005052
PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123
PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009
PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100
PO:PO:0020137PO:PO:0025022PO:PO:0025281ScanProsite:PS01187PANTHER:PTHR22765PANTHER:PTHR22765:SF54
SMART:SM00179SUPFAM:SSF52025SignalP:SignalP-noTMTMHMM:TMhelixEMBL:U79959EMBL:U86700
UniParc:UPI0000048842Symbol:VSR1EMBL:Y07917SEG:seg::
Description
VSR1Vacuolar-sorting receptor 1 [Source:UniProtKB/Swiss-Prot;Acc:P93026]
Coordinates
chr3:+:19587756..19591947
Molecular Weight (calculated)
68995.3 Da
IEP (calculated)
6.197
GRAVY (calculated)
-0.351
Length
623 amino acids
Sequence
(BLAST)
001: MKLGLFTLSF LLILNLAMGR FVVEKNNLKV TSPDSIKGIY ECAIGNFGVP QYGGTLVGTV VYPKSNQKAC KSYSDFDISF KSKPGRLPTF VLIDRGDCYF
101: TLKAWIAQQA GAAAILVADS KAEPLITMDT PEEDKSDADY LQNITIPSAL ITKTLGDSIK SALSGGDMVN MKLDWTESVP HPDERVEYEL WTNSNDECGK
201: KCDTQIEFLK NFKGAAQILE KGGHTQFTPH YITWYCPEAF TLSKQCKSQC INHGRYCAPD PEQDFTKGYD GKDVVVQNLR QACVYRVMND TGKPWVWWDY
301: VTDFAIRCPM KEKKYTKECA DGIIKSLGID LKKVDKCIGD PEADVENPVL KAEQESQIGK GSRGDVTILP TLVVNNRQYR GKLEKGAVLK AMCSGFQEST
401: EPAICLTEDL ETNECLENNG GCWQDKAANI TACRDTFRGR LCECPTVQGV KFVGDGYTHC KASGALHCGI NNGGCWRESR GGFTYSACVD DHSKDCKCPL
501: GFKGDGVKNC EDVDECKEKT VCQCPECKCK NTWGSYECSC SNGLLYMREH DTCIGSGKVG TTKLSWSFLW ILIIGVGVAG LSGYAVYKYR IRSYMDAEIR
601: GIMAQYMPLE SQPPNTSGHH MDI
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.