Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 6
- vacuole 5
- plasma membrane 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G14720.1 | Thale cress | extracellular, plasma membrane, vacuole | 96.5 | 96.5 |
| CDY37219 | Canola | extracellular, golgi, plasma membrane | 94.27 | 94.87 |
| CDX81459 | Canola | plasma membrane | 94.11 | 94.71 |
| Bra039817.1-P | Field mustard | extracellular, golgi, plasma membrane | 94.11 | 94.71 |
| Bra013121.1-P | Field mustard | extracellular, plasma membrane, vacuole | 95.06 | 94.61 |
| CDY65441 | Canola | plasma membrane | 94.9 | 94.45 |
| CDX93144 | Canola | extracellular, plasma membrane, vacuole | 91.4 | 94.1 |
| KRG91109 | Soybean | endoplasmic reticulum | 82.32 | 81.93 |
| KRH35666 | Soybean | endoplasmic reticulum | 82.17 | 81.78 |
| KRH27575 | Soybean | endoplasmic reticulum | 81.69 | 81.69 |
| VIT_03s0091g00740.t01 | Wine grape | plasma membrane | 81.05 | 80.67 |
| KRH77935 | Soybean | endoplasmic reticulum | 82.17 | 80.25 |
| PGSC0003DMT400066159 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 80.41 | 80.16 |
| Solyc01g107130.2.1 | Tomato | nucleus | 80.25 | 80.0 |
| Zm00001d012390_P001 | Maize | cytosol | 11.31 | 78.89 |
| Zm00001d004678_P001 | Maize | cytosol, nucleus, plastid | 12.1 | 75.25 |
| GSMUA_Achr6P16900_001 | Banana | cytosol, nucleus, plasma membrane | 67.52 | 74.65 |
| Os10t0346600-00 | Rice | plasma membrane | 74.04 | 73.69 |
| GSMUA_Achr10P... | Banana | cytosol | 66.56 | 73.59 |
| Zm00001d014302_P003 | Maize | plasma membrane | 71.82 | 72.98 |
| AT3G52850.1 | Thale cress | extracellular, golgi, plasma membrane | 71.18 | 71.75 |
| TraesCS1D01G131100.1 | Wheat | golgi | 72.29 | 71.72 |
| TraesCS1B01G148200.1 | Wheat | plasma membrane | 71.82 | 71.36 |
| TraesCS1A01G134600.2 | Wheat | extracellular, plasma membrane, vacuole | 72.29 | 71.16 |
| Zm00001d014303_P002 | Maize | plasma membrane | 67.68 | 68.66 |
| HORVU1Hr1G032780.9 | Barley | extracellular | 68.47 | 67.61 |
| AT2G30290.2 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 67.52 | 66.15 |
| AT1G30900.1 | Thale cress | extracellular, plasma membrane, vacuole | 60.03 | 59.75 |
| AT4G20110.2 | Thale cress | plasma membrane | 59.71 | 59.71 |
| AT2G34940.1 | Thale cress | plasma membrane | 56.05 | 56.96 |
Protein Annotations
| Gene3D:2.10.25.10 | MapMan:22.5.2.1 | Gene3D:3.50.30.30 | EntrezGene:815962 | UniProt:A0A178VT51 | ProteinID:AAC24183.1 |
| ProteinID:AAM15053.1 | ProteinID:AEC06328.1 | ProteinID:AEC06329.1 | ArrayExpress:AT2G14740 | EnsemblPlantsGene:AT2G14740 | RefSeq:AT2G14740 |
| TAIR:AT2G14740 | RefSeq:AT2G14740-TAIR-G | EnsemblPlants:AT2G14740.1 | TAIR:AT2G14740.1 | Symbol:ATVSR3 | InterPro:EGF-like_CS |
| InterPro:EGF-like_Ca-bd_dom | InterPro:EGF_Ca-bd_CS | GO:GO:0000139 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005794 |
| GO:GO:0005802 | GO:GO:0006623 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0030665 | GO:GO:0031410 | GO:GO:0031902 | RefSeq:NP_179081.1 | RefSeq:NP_849955.1 |
| UniProt:O80977 | ProteinID:OAP08968.1 | InterPro:PA_domain | PFAM:PF02225 | PFAM:PF12662 | PO:PO:0000293 |
| PO:PO:0005052 | PO:PO:0009025 | ScanProsite:PS01186 | ScanProsite:PS01187 | PANTHER:PTHR22765 | PANTHER:PTHR22765:SF54 |
| SMART:SM00179 | SUPFAM:SSF52025 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000004850C | InterPro:cEGF |
| SEG:seg | : | : | : | : | : |
Description
VSR3VSR3 [Source:UniProtKB/TrEMBL;Acc:A0A178VT51]
Coordinates
chr2:+:6308683..6312726
Molecular Weight (calculated)
69747.6 Da
IEP (calculated)
4.993
GRAVY (calculated)
-0.409
Length
628 amino acids
Sequence
(BLAST)
(BLAST)
001: MKQLLCYLPW LLLLTLLVSP LNDARFVVEK NSLSVTSPES IKGTHDSAIG NFGIPQYGGS MAGTVVYPKE NQKSCKEFSD FSISFKSQPG ALPTFLLVDR
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKECADSVIK SLGIDSKKLD KCMGDPDADL DNPVLKEEQD AQVGKGSRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEETTEPAIC LSTDVESNEC LDNNGGCWQD KSANITACKD TFRGRVCECP TVDGVQFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GTKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YIRDHDTCIS KTGAQVRSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEIP NHVNDERA
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKECADSVIK SLGIDSKKLD KCMGDPDADL DNPVLKEEQD AQVGKGSRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEETTEPAIC LSTDVESNEC LDNNGGCWQD KSANITACKD TFRGRVCECP TVDGVQFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GTKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YIRDHDTCIS KTGAQVRSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEIP NHVNDERA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.