Factsheet for GSMUA_Achr10P11350_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P10400_001
GSMUA_Achr1P23530_001
GSMUA_Achr3P17220_001
GSMUA_Achr6P21090_001
GSMUA_Achr6P27980_001
GSMUA_Achr7P04990_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G14720.1	GSMUA_Achr3P17220_001	AT4G16190.1	23738689
AT2G14720.1	GSMUA_Achr6P21090_001	AT4G16190.1	23738689
AT2G14720.1	GSMUA_Achr6P27980_001	AT4G16190.1	23738689
AT2G14720.1	GSMUA_Achr1P10400_001	AT5G20500.1	23738689
AT2G14720.1	GSMUA_Achr1P23530_001	AT5G20500.1	23738689
AT2G14720.1	GSMUA_Achr7P04990_001	AT5G20500.1	23738689

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P16900_001	Banana	cytosol, nucleus, plasma membrane	90.67	90.67
Zm00001d012390_P001	Maize	cytosol	13.56	85.56
Zm00001d004678_P001	Maize	cytosol, nucleus, plastid	14.61	82.18
Os10t0346600-00	Rice	plasma membrane	82.04	73.85
Zm00001d014302_P003	Maize	plasma membrane	78.7	72.33
TraesCS1D01G131100.1	Wheat	golgi	79.93	71.72
TraesCS1B01G148200.1	Wheat	plasma membrane	79.75	71.68
TraesCS1A01G134600.2	Wheat	extracellular, plasma membrane, vacuole	79.93	71.16
VIT_03s0091g00740.t01	Wine grape	plasma membrane	76.06	68.46
KRG91109	Soybean	endoplasmic reticulum	76.06	68.46
Zm00001d014303_P002	Maize	plasma membrane	74.3	68.17
KRH35666	Soybean	endoplasmic reticulum	75.7	68.15
PGSC0003DMT400066159	Potato	endoplasmic reticulum, plasma membrane, vacuole	75.0	67.62
Solyc01g107130.2.1	Tomato	nucleus	74.82	67.46
CDY37219	Canola	extracellular, golgi, plasma membrane	73.94	67.31
HORVU1Hr1G032780.9	Barley	extracellular	75.35	67.3
CDX81459	Canola	plasma membrane	73.77	67.15
Bra039817.1-P	Field mustard	extracellular, golgi, plasma membrane	73.42	66.83
AT2G14740.1	Thale cress	extracellular, plasma membrane, vacuole	73.59	66.56
CDX93144	Canola	extracellular, plasma membrane, vacuole	71.48	66.56
Bra013121.1-P	Field mustard	extracellular, plasma membrane, vacuole	73.42	66.09
AT2G14720.1	Thale cress	extracellular, plasma membrane, vacuole	73.06	66.08
CDY65441	Canola	plasma membrane	73.06	65.77
KRH27575	Soybean	endoplasmic reticulum	71.83	64.97
KRH77935	Soybean	endoplasmic reticulum	71.13	62.83
GSMUA_Achr11P...	Banana	extracellular, golgi, plasma membrane	68.13	62.32
GSMUA_Achr7P22040_001	Banana	extracellular, plasma membrane	68.13	62.22
GSMUA_AchrUn_...	Banana	extracellular, golgi, plasma membrane	54.93	58.98
GSMUA_AchrUn_...	Banana	plasma membrane	56.69	54.76
GSMUA_Achr3P23680_001	Banana	plasma membrane	53.17	53.64
GSMUA_Achr7P03630_001	Banana	plasma membrane	53.52	30.04

Protein Annotations

Gene3D:2.10.25.10	MapMan:22.5.2.1	Gene3D:3.40.30.10	Gene3D:3.50.30.30	InterPro:EGF-like_Ca-bd_dom	InterPro:EGF_Ca-bd_CS
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
EnsemblPlantsGene:GSMUA_Achr10G11350_001	EnsemblPlants:GSMUA_Achr10P11350_001	EnsemblPlants:GSMUA_Achr10T11350_001	UniProt:M0RHB1	InterPro:PA_domain	PFAM:PF02225
ScanProsite:PS01187	PANTHER:PTHR22765	PANTHER:PTHR22765:SF54	SMART:SM00179	SUPFAM:SSF52025	TMHMM:TMhelix
UniParc:UPI000294B33B	SEG:seg	:	:	:	:

Description

Vacuolar-sorting receptor 3 [Source:GMGC_GENE;Acc:GSMUA_Achr10G11350_001]

Coordinates

chr10:+:20836038..20843205

Molecular Weight (calculated)

63502.1 Da

IEP (calculated)

4.621

GRAVY (calculated)

-0.426

Length

568 amino acids

Sequence
(BLAST)

001: MAGAVVYPKE NAAACDEFSR PDLFRSKVGA LPNFLLIDRG DCLFTKKVWN AQNAGASAVL VVDDKDEPLI TMDLPLEDDE SAKYIQNITI PSALIDKRFG
101: EQLKTAVRSG EMVNVNLDWR EAVPHPDERV EYELWTNSND ECGAKCDMLM NFLKEFRGVA QLLEKGGYSQ FTPHYITWYC PQAFIISKQC KSQCINKGRY
201: CAPDPEQDFS TGYDGKDVVI ENLRQLCVFR VANESKRPWV WWDYVTDFHI RCPMNEKKYN KDCADTVMES LGLDIKKVEQ CMGDPNADSD NPLLKMEQDA
301: QVGTGSRGDV TILPTLIVNN RQYRGKLEKK AVLKAICAGF EETTEPPACL SDDIETNECL DDNGGCWHDK ASNITACKDT FRGRVCECPV FNGVQFKGDG
401: YSNCEAIGPG RCRINNGGCW QETRDGKTVS ACQESGDGKC QCPLGFEGDA VKVCENINEC EKKTACQCPE CSCKDTWGSY ECTCSGDLLY IKEQDTCISK
501: KASEAKATWA AAWVLLMVLA IASFGAYVIY KYRLRSYMDS EIRAIMAQYM PLDGQGELPN HSLEEIHA

Best Arabidopsis Sequence Match ( AT2G14740.1 )
(BLAST)

001: MKQLLCYLPW LLLLTLLVSP LNDARFVVEK NSLSVTSPES IKGTHDSAIG NFGIPQYGGS MAGTVVYPKE NQKSCKEFSD FSISFKSQPG ALPTFLLVDR
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKECADSVIK SLGIDSKKLD KCMGDPDADL DNPVLKEEQD AQVGKGSRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEETTEPAIC LSTDVESNEC LDNNGGCWQD KSANITACKD TFRGRVCECP TVDGVQFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GTKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YIRDHDTCIS KTGAQVRSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEIP NHVNDERA

Arabidopsis Description

VSR3VSR3 [Source:UniProtKB/TrEMBL;Acc:A0A178VT51]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.