Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d016446_P001 | |
| Zm00001d046900_P003 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G14720.1 | Zm00001d016446_P001 | AT4G16190.1 | 23738689 |
| AT2G14720.1 | Zm00001d046900_P003 | AT5G20500.1 | 23738689 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d012390_P001 | Maize | cytosol | 86.14 | 96.67 |
| Zm00001d014302_P003 | Maize | plasma membrane | 91.09 | 14.89 |
| Zm00001d014303_P002 | Maize | plasma membrane | 90.1 | 14.7 |
| GSMUA_Achr10P... | Banana | cytosol | 82.18 | 14.61 |
| GSMUA_Achr6P16900_001 | Banana | cytosol, nucleus, plasma membrane | 81.19 | 14.44 |
| PGSC0003DMT400066159 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 80.2 | 12.86 |
| Solyc01g107130.2.1 | Tomato | nucleus | 79.21 | 12.7 |
| KRH27575 | Soybean | endoplasmic reticulum | 78.22 | 12.58 |
| KRG91109 | Soybean | endoplasmic reticulum | 78.22 | 12.52 |
| KRH35666 | Soybean | endoplasmic reticulum | 78.22 | 12.52 |
| CDX93144 | Canola | extracellular, plasma membrane, vacuole | 75.25 | 12.46 |
| VIT_03s0091g00740.t01 | Wine grape | plasma membrane | 77.23 | 12.36 |
| CDX81459 | Canola | plasma membrane | 76.24 | 12.34 |
| CDY37219 | Canola | extracellular, golgi, plasma membrane | 76.24 | 12.34 |
| KRH77935 | Soybean | endoplasmic reticulum | 78.22 | 12.29 |
| Bra039817.1-P | Field mustard | extracellular, golgi, plasma membrane | 75.25 | 12.18 |
| AT2G14740.1 | Thale cress | extracellular, plasma membrane, vacuole | 75.25 | 12.1 |
| CDY65441 | Canola | plasma membrane | 75.25 | 12.04 |
| Bra013121.1-P | Field mustard | extracellular, plasma membrane, vacuole | 75.25 | 12.04 |
| AT2G14720.1 | Thale cress | extracellular, plasma membrane, vacuole | 74.26 | 11.94 |
| Zm00001d052354_P005 | Maize | plasma membrane | 73.27 | 11.88 |
| Zm00001d005062_P003 | Maize | plasma membrane | 73.27 | 11.86 |
| Zm00001d022439_P001 | Maize | extracellular, plasma membrane, vacuole | 71.29 | 11.37 |
| Zm00001d046945_P001 | Maize | plasma membrane | 68.32 | 10.97 |
| Zm00001d029056_P002 | Maize | extracellular, plasma membrane, vacuole | 67.33 | 10.86 |
| Zm00001d047522_P002 | Maize | extracellular, plasma membrane, vacuole | 67.33 | 10.4 |
| Zm00001d053767_P001 | Maize | mitochondrion | 4.95 | 3.57 |
| Zm00001d005060_P001 | Maize | extracellular | 0.99 | 0.92 |
Protein Annotations
| EnsemblPlants:Zm00001d004678_P001 | EnsemblPlants:Zm00001d004678_T001 | EnsemblPlantsGene:Zm00001d004678 | PANTHER:PTHR22765 | PANTHER:PTHR22765:SF54 | ProteinID:ONM19419.1 |
| UniParc:UPI000221E907 | UniProt:A0A1D6EH00 | MapMan:22.5.2.1 | : | : | : |
Description
Vacuolar-sorting receptor 1
Coordinates
chr2:+:129860948..129861893
Molecular Weight (calculated)
11229.1 Da
IEP (calculated)
4.395
GRAVY (calculated)
-0.648
Length
101 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDPNADSDH PILKMEQDAQ IGKGSRGDVT ILPTLVVNNR QYRGKLERKA VLKAICAGFE ETTEPNVCLS DDIETNECLN DNGGYWQDKS WSNIEVCRST
101: L
101: L
001: MKQLLCYLPW LLLLSLVVSP FNEARFVVEK NSLSVTSPES IKGTHDSAIG NFGIPQYGGS MAGTVVYPKE NQKSCKEFSD FSISFKSQPG ALPTFLLVDR
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKDCAESVIK SLGIDSRKID KCMGDPDADL DNPVLKEEQD AQVGKGTRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEESTEPAIC LSTDMETNEC LDNNGGCWQD KSANITACKD TFRGKVCVCP IVDGVRFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GVKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YMRDHDTCIS KTGSQVKSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEVP NHTNDERA
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKDCAESVIK SLGIDSRKID KCMGDPDADL DNPVLKEEQD AQVGKGTRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEESTEPAIC LSTDMETNEC LDNNGGCWQD KSANITACKD TFRGKVCVCP IVDGVRFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GVKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YMRDHDTCIS KTGSQVKSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEVP NHTNDERA
Arabidopsis Description
VSR4Vacuolar-sorting receptor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q56ZQ3]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.