Factsheet for VIT_03s0091g00740.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol, golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0023g02450.t01
VIT_11s0052g00500.t01
VIT_18s0001g13380.t01
VIT_18s0001g13390.t01
VIT_18s0001g13400.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G14720.1	VIT_04s0023g02450.t01	AT4G16190.1	23738689
AT2G14720.1	VIT_18s0001g13380.t01	AT4G16190.1	23738689
AT2G14720.1	VIT_18s0001g13390.t01	AT4G16190.1	23738689
AT2G14720.1	VIT_18s0001g13400.t01	AT4G16190.1	23738689
AT2G14720.1	VIT_11s0052g00500.t01	AT5G20500.1	23738689

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066159	Potato	endoplasmic reticulum, plasma membrane, vacuole	84.31	84.44
KRH35666	Soybean	endoplasmic reticulum	83.99	83.99
Solyc01g107130.2.1	Tomato	nucleus	83.68	83.81
KRG91109	Soybean	endoplasmic reticulum	83.68	83.68
Zm00001d012390_P001	Maize	cytosol	11.89	83.33
AT2G14740.1	Thale cress	extracellular, plasma membrane, vacuole	80.67	81.05
AT2G14720.1	Thale cress	extracellular, plasma membrane, vacuole	80.67	81.05
CDY37219	Canola	extracellular, golgi, plasma membrane	79.71	80.61
CDX81459	Canola	plasma membrane	79.56	80.45
CDX93144	Canola	extracellular, plasma membrane, vacuole	77.65	80.33
Bra039817.1-P	Field mustard	extracellular, golgi, plasma membrane	79.24	80.13
KRH27575	Soybean	endoplasmic reticulum	79.71	80.1
Bra013121.1-P	Field mustard	extracellular, plasma membrane, vacuole	80.03	80.03
CDY65441	Canola	plasma membrane	79.87	79.87
KRH77935	Soybean	endoplasmic reticulum	79.71	78.23
GSMUA_Achr6P16900_001	Banana	cytosol, nucleus, plasma membrane	69.89	77.64
Zm00001d004678_P001	Maize	cytosol, nucleus, plastid	12.36	77.23
GSMUA_Achr10P...	Banana	cytosol	68.46	76.06
Os10t0346600-00	Rice	plasma membrane	74.33	74.33
Zm00001d014302_P003	Maize	plasma membrane	71.47	72.98
TraesCS1D01G131100.1	Wheat	golgi	72.42	72.2
TraesCS1B01G148200.1	Wheat	plasma membrane	71.47	71.36
TraesCS1A01G134600.2	Wheat	extracellular, plasma membrane, vacuole	72.11	71.32
VIT_08s0058g01360.t01	Wine grape	plasma membrane	69.89	70.67
Zm00001d014303_P002	Maize	plasma membrane	68.3	69.63
HORVU1Hr1G032780.9	Barley	extracellular	67.83	67.3
VIT_01s0011g01050.t01	Wine grape	extracellular, plasma membrane, vacuole	62.12	62.22
VIT_08s0040g00700.t01	Wine grape	plasma membrane	12.04	45.78
VIT_11s0052g00060.t01	Wine grape	extracellular	10.94	45.1

Protein Annotations

EntrezGene:100265163	wikigene:100265163	Gene3D:2.10.25.10	MapMan:22.5.2.1	Gene3D:3.50.30.30	ProteinID:CBI22461
ProteinID:CBI22461.3	UniProt:D7SXR1	InterPro:EGF-like_Ca-bd_dom	InterPro:EGF_Ca-bd_CS	EMBL:FN595242	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100265163
wikigene:LOC100265163	InterPro:PA_domain	PFAM:PF02225	PFAM:PF12662	ScanProsite:PS01187	PANTHER:PTHR22765
PANTHER:PTHR22765:SF54	SMART:SM00179	SUPFAM:SSF52025	SignalP:SignalP-noTM	TIGR:TC54066	TIGR:TC60090
TMHMM:TMhelix	UniParc:UPI00015CD114	ArrayExpress:VIT_03s0091g00740	EnsemblPlantsGene:VIT_03s0091g00740	EnsemblPlants:VIT_03s0091g00740.t01	unigene:Vvi.3351
RefSeq:XP_002264769	RefSeq:XP_002264769.1	InterPro:cEGF	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:-:7195947..7206249

Molecular Weight (calculated)

69463.4 Da

IEP (calculated)

4.997

GRAVY (calculated)

-0.315

Length

631 amino acids

Sequence
(BLAST)

001: MGLLRSVLAL CLGFVVVCLV VVPPAVAKFV VEKNSLTVVS PESIKGTHDS AIGNFGIPQY GGSMAGTVVY PKENTKGCKG FDEYGISFKS KIGALPTFVV
101: VDRGDCFFAL KVWNAQNAGA SAVLVADNIE EPLITMDSPE EDGSSSKYIE NITIPSALIE KSFGEKLKKA ITSGEMVNVN LDWREAVPHP DDRVEYELWT
201: NSNDECGVKC DMLMEFVKDF KGAAQILEKG GFTQFTPHYI TWYCPQAFTV SKQCKSQCIN HGRYCAPDPE QDFSKGYEGK DVVLENLRQL CVFRVANESK
301: RPWVWWDYVT DFQIRCPMRK KKYNKECAET VIASLGLDSK KIEKCMGDSN ADSDNPLLKE EQDAQVGKGT RGDVTILPTL VVNNRQYRGK LEKGAVLKAI
401: CSGFEETTEP DVCLSGDVET NECLDNNGGC WQDKTANITA CKDTFRGRVC ECPLVDGVKF KGDGYSSCEA SGPGRCKINN GGCWHDSQDG QSFSACLDID
501: GGKCECPPGF KGDGVKSCKD VDECKEKKAC QCPECSCKNT WGSYECTCSG DLLYIRDHDT CISKRATEVK SAWAAVWVIL IGLAMAGTGA YLVYKYRIRS
601: YMDSEIRAIM AQYMPLDSQT EVPNHVSEDH A

Best Arabidopsis Sequence Match ( AT2G14740.1 )
(BLAST)

001: MKQLLCYLPW LLLLTLLVSP LNDARFVVEK NSLSVTSPES IKGTHDSAIG NFGIPQYGGS MAGTVVYPKE NQKSCKEFSD FSISFKSQPG ALPTFLLVDR
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKECADSVIK SLGIDSKKLD KCMGDPDADL DNPVLKEEQD AQVGKGSRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEETTEPAIC LSTDVESNEC LDNNGGCWQD KSANITACKD TFRGRVCECP TVDGVQFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GTKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YIRDHDTCIS KTGAQVRSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEIP NHVNDERA

Arabidopsis Description

VSR3VSR3 [Source:UniProtKB/TrEMBL;Acc:A0A178VT51]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.