Factsheet for TraesCS1D01G131100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G273100.1
TraesCS2D01G272400.1
TraesCS5A01G326100.1
TraesCS5B01G326500.1
TraesCS5D01G332200.1
TraesCS7A01G493400.1
TraesCS7B01G404000.1
TraesCS7D01G480900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G14720.1	TraesCS2A01G273100.1	AT4G16190.1	23738689
AT2G14720.1	TraesCS2D01G272400.1	AT4G16190.1	23738689
AT2G14720.1	TraesCS5A01G326100.1	AT4G16190.1	23738689
AT2G14720.1	TraesCS5B01G326500.1	AT4G16190.1	23738689
AT2G14720.1	TraesCS5D01G332200.1	AT4G16190.1	23738689
AT2G14720.1	TraesCS7A01G493400.1	AT5G20500.1	23738689
AT2G14720.1	TraesCS7B01G404000.1	AT5G20500.1	23738689
AT2G14720.1	TraesCS7D01G480900.1	AT5G20500.1	23738689

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G134600.2	Wheat	extracellular, plasma membrane, vacuole	99.53	98.75
TraesCS1B01G148200.1	Wheat	plasma membrane	98.26	98.42
HORVU1Hr1G032780.9	Barley	extracellular	91.0	90.57
Os10t0346600-00	Rice	plasma membrane	87.99	88.27
Zm00001d014302_P003	Maize	plasma membrane	85.47	87.54
Zm00001d014303_P002	Maize	plasma membrane	81.04	82.88
GSMUA_Achr6P16900_001	Banana	cytosol, nucleus, plasma membrane	72.67	80.99
GSMUA_Achr10P...	Banana	cytosol	71.72	79.93
KRG91109	Soybean	endoplasmic reticulum	74.41	74.64
KRH35666	Soybean	endoplasmic reticulum	74.09	74.33
CDX81459	Canola	plasma membrane	71.72	72.76
CDY37219	Canola	extracellular, golgi, plasma membrane	71.72	72.76
CDX93144	Canola	extracellular, plasma membrane, vacuole	69.98	72.62
VIT_03s0091g00740.t01	Wine grape	plasma membrane	72.2	72.42
PGSC0003DMT400066159	Potato	endoplasmic reticulum, plasma membrane, vacuole	72.04	72.38
AT2G14720.1	Thale cress	extracellular, plasma membrane, vacuole	71.72	72.29
AT2G14740.1	Thale cress	extracellular, plasma membrane, vacuole	71.72	72.29
Bra039817.1-P	Field mustard	extracellular, golgi, plasma membrane	71.09	72.12
KRH27575	Soybean	endoplasmic reticulum	71.41	71.97
Solyc01g107130.2.1	Tomato	nucleus	71.56	71.9
Bra013121.1-P	Field mustard	extracellular, plasma membrane, vacuole	71.25	71.47
CDY65441	Canola	plasma membrane	71.09	71.32
KRH77935	Soybean	endoplasmic reticulum	70.93	69.83
TraesCS5D01G145500.1	Wheat	plasma membrane	66.51	67.9
TraesCS4D01G119400.1	Wheat	golgi	66.03	66.88
TraesCS4D01G172100.1	Wheat	golgi	63.98	64.9
TraesCS2D01G105100.1	Wheat	plasma membrane	62.56	62.26
TraesCS7D01G145700.2	Wheat	cytosol	27.49	58.0
TraesCS7D01G471300.1	Wheat	golgi	55.92	56.19
TraesCS5D01G061200.2	Wheat	extracellular	44.23	54.16
TraesCS2D01G423700.1	Wheat	golgi	54.66	53.98

Protein Annotations

EnsemblPlants:TraesCS1D01G131100.1	EnsemblPlantsGene:TraesCS1D01G131100	Gene3D:2.10.25.10	Gene3D:3.50.30.30	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EGF_Ca-bd_CS	InterPro:PA_domain	PANTHER:PTHR22765	PANTHER:PTHR22765:SF54	PFAM:PF02225
ScanProsite:PS01187	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF52025	TIGR:cd00054	TMHMM:TMhelix
MapMan:22.5.2.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:148655561..148686456

Molecular Weight (calculated)

70584.9 Da

IEP (calculated)

6.238

GRAVY (calculated)

-0.400

Length

633 amino acids

Sequence
(BLAST)

001: MWGLGFRWLL LLLLAFAAAV ELEARFVVEK NSLMVTSPTA LRGRHDSAIG NFGIPQYGGS MAGAVVYPKG NSDACEAFNS GRKEHLFRTK PGALPSFLLI
101: DRGNCLFAKK VWNAQYAGAS AVLVVDDKDE PLITMDLLQE DDEAAKYIQN ISIPSALIDK KFGEQLKKAV KDGEMVNVNL DWREAVPHPD NRVEYELWTN
201: SNDECGPKCD MLMHFLKEFK GAAQLLEKGG YSQFTPHYIT WYCPQAFVVS KQCKSQCINH GRYCAPDPEQ DFSTGYDGKD VVVENLRQLC VFNVANEIKK
301: PWIWWDYVTD FHIRCPMKEK KYNKKCAETV IKSLGLEVKK IDKCMGDPND DSDHPLLKME QDSQIGKGSR GDVTILPTLV VNNRQYRGKL GRKAVLKAIC
401: AGFEETTEPN VCLSDDMETN ECLSDNGGCW QDKAANVTAC RDTFRGRVCE CPTFNGVQFK GDGYSNCEPA GPGKCLINHG GCWHETRNGK TFSACQESGD
501: QNCKCPAGFR GDGVKKCHDI DECKERKACQ CPECSCRDTW GGYDCTCSGD LLYIKEHDTC ISKTTVQAKA AWAAVWGILV ALVIVAAGSY VVYKYRIRSY
601: MDSEIRAIMA QYMPLDSQGE VPNDSHEDHP LAH

Best Arabidopsis Sequence Match ( AT2G14740.1 )
(BLAST)

001: MKQLLCYLPW LLLLTLLVSP LNDARFVVEK NSLSVTSPES IKGTHDSAIG NFGIPQYGGS MAGTVVYPKE NQKSCKEFSD FSISFKSQPG ALPTFLLVDR
101: GDCFFALKVW NAQKAGASAV LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW REAVPHPDDR VEYELWTNSN
201: DECGVKCDML MEFVKDFKGA AQILEKGGFT QFRPHYITWY CPHAFTLSRQ CKSQCINKGR YCAPDPEQDF SSGYDGKDVV VENLRQLCVY KVANETGKPW
301: VWWDYVTDFQ IRCPMKEKKY NKECADSVIK SLGIDSKKLD KCMGDPDADL DNPVLKEEQD AQVGKGSRGD VTILPTLVVN NRQYRGKLEK SAVLKALCSG
401: FEETTEPAIC LSTDVESNEC LDNNGGCWQD KSANITACKD TFRGRVCECP TVDGVQFKGD GYSHCEPSGP GRCTINNGGC WHEERDGHAF SACVDKDSVK
501: CECPPGFKGD GTKKCEDINE CKEKKACQCP ECSCKNTWGS YECSCSGDLL YIRDHDTCIS KTGAQVRSAW AAVWLIMLSL GLAAAGAYLV YKYRLRQYMD
601: SEIRAIMAQY MPLDSQPEIP NHVNDERA

Arabidopsis Description

VSR3VSR3 [Source:UniProtKB/TrEMBL;Acc:A0A178VT51]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.