Factsheet for TraesCS2D01G272400.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G273100.1	Wheat	golgi	98.09	94.99
KXG26035	Sorghum	endoplasmic reticulum, golgi, vacuole	73.3	79.59
HORVU2Hr1G066680.1	Barley	endoplasmic reticulum	79.29	76.98
TraesCS5D01G332200.1	Wheat	extracellular	75.2	73.21
GSMUA_Achr3P17220_001	Banana	nucleus	56.95	70.37
GSMUA_Achr6P27980_001	Banana	vacuole	68.94	68.01
GSMUA_Achr6P21090_001	Banana	endoplasmic reticulum	67.57	67.76
KRH51767	Soybean	endoplasmic reticulum	64.03	64.21
PGSC0003DMT400009507	Potato	extracellular	63.22	63.91
KRH61087	Soybean	endoplasmic reticulum	63.49	63.66
Solyc04g080960.2.1	Tomato	extracellular	62.94	63.64
VIT_04s0023g02450.t01	Wine grape	vacuole	62.94	62.94
KRH17382	Soybean	endoplasmic reticulum	62.67	62.67
VIT_18s0001g13400.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	62.94	62.26
VIT_18s0001g13380.t01	Wine grape	extracellular	61.58	61.92
KRH05898	Soybean	endoplasmic reticulum, vacuole	62.4	61.89
CDY32227	Canola	endoplasmic reticulum, extracellular, vacuole	61.58	61.41
Bra033545.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	61.58	61.41
CDY34441	Canola	endoplasmic reticulum	61.31	61.14
VIT_18s0001g13390.t01	Wine grape	endoplasmic reticulum	61.04	60.87
AT4G16190.1	Thale cress	endoplasmic reticulum, extracellular	61.04	60.05
Os04t0311400-01	Rice	nucleus	61.04	58.33
CDX90537	Canola	endoplasmic reticulum	57.49	57.65
CDY09707	Canola	endoplasmic reticulum, extracellular	57.22	57.38
Bra012733.1-P	Field mustard	endoplasmic reticulum	57.22	57.07
TraesCS2D01G200500.1	Wheat	extracellular	50.14	49.73
KRH49717	Soybean	endoplasmic reticulum	22.34	46.59
TraesCS5D01G216300.1	Wheat	unclear	32.7	33.24
TraesCS4D01G061400.1	Wheat	extracellular	19.89	21.28

Protein Annotations

MapMan:19.4.1.1	Gene3D:3.90.70.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0008234	GO:GO:0016787	GO:GO:0019538	PFAM:PF00112	PFAM:PF08246
ScanProsite:PS00639	ScanProsite:PS00640	PANTHER:PTHR12411	PANTHER:PTHR12411:SF380	InterPro:Papain_like_cys_pep_sf	InterPro:Pept_asp_AS
InterPro:Pept_his_AS	InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C	InterPro:Prot_inhib_I29	SMART:SM00645	SMART:SM00848
SUPFAM:SSF54001	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS2D01G272400	EnsemblPlants:TraesCS2D01G272400.1	TIGR:cd02248	SEG:seg

Description

No Description!

Coordinates

chr2D:+:337134138..337137717

Molecular Weight (calculated)

40237.8 Da

IEP (calculated)

7.759

GRAVY (calculated)

-0.336

Length

367 amino acids

Sequence
(BLAST)

001: MARPRLRLLL LVAAVLLLLH PALSSASEGL EDPLIEQVVG GDAENELELN AEAHFATFVR RFGKSYRDAD EHAHRLSVFR ANLRRARRHQ RLDPSAVHGI
101: TKFSDLTPDE FRERFLGLRK SRRSFLKGIS GSAHDAPALP TDGLPTEFDW REHGAVGPVK DQGSCGSSNY LATGKLEVLS EQQLVDCDHE CDPSEPRACD
201: AGCNGGLMTT AFSYLAKAGG LETEKDYPYT GKNSACKFDK SKIAAQVKNF STVAIDEDQI AANLVKHGPL AIGINAVFMQ TYIGGVSCPY ICGRHLDHGV
301: LLVGYGSAGY APLRFKEKPY WIIKNSWGEN WGESGYYKIC RGPHVKNKCG VDSMVSTVTA IHTSKKE

Best Arabidopsis Sequence Match ( AT4G39090.1 )
(BLAST)

001: MDRLKLYFSV FVLSFFIVSV SSSDVNDGDD LVIRQVVGGA EPQVLTSEDH FSLFKRKFGK VYASNEEHDY RFSVFKANLR RARRHQKLDP SATHGVTQFS
101: DLTRSEFRKK HLGVRSGFKL PKDANKAPIL PTENLPEDFD WRDHGAVTPV KNQGSCGSCW SFSATGALEG ANFLATGKLV SLSEQQLVDC DHECDPEEAD
201: SCDSGCNGGL MNSAFEYTLK TGGLMKEEDY PYTGKDGKTC KLDKSKIVAS VSNFSVISID EEQIAANLVK NGPLAVAINA GYMQTYIGGV SCPYICTRRL
301: NHGVLLVGYG AAGYAPARFK EKPYWIIKNS WGETWGENGF YKICKGRNIC GVDSMVSTVA ATVSTTAH

Arabidopsis Description

RD19ARD19A [Source:UniProtKB/TrEMBL;Acc:A0A178V006]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.