Factsheet for PGSC0003DMT400009507

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
golgi 5
plasma membrane 5
endoplasmic reticulum 5
vacuole 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g080960.2.1	Tomato	extracellular	95.87	95.87
Bra033545.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	73.0	72.01
CDY32227	Canola	endoplasmic reticulum, extracellular, vacuole	73.0	72.01
CDY34441	Canola	endoplasmic reticulum	73.0	72.01
KRH51767	Soybean	endoplasmic reticulum	70.52	69.95
GSMUA_Achr3P17220_001	Banana	nucleus	56.75	69.36
KRH61087	Soybean	endoplasmic reticulum	69.7	69.13
PGSC0003DMT400079506	Potato	endoplasmic reticulum, extracellular, vacuole	69.7	68.75
KRH17382	Soybean	endoplasmic reticulum	69.42	68.66
AT4G16190.1	Thale cress	endoplasmic reticulum, extracellular	69.97	68.1
VIT_18s0001g13400.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	69.42	67.92
VIT_04s0023g02450.t01	Wine grape	vacuole	68.59	67.85
KRH05898	Soybean	endoplasmic reticulum, vacuole	69.15	67.84
CDY09707	Canola	endoplasmic reticulum, extracellular	67.77	67.21
VIT_18s0001g13380.t01	Wine grape	extracellular	66.94	66.58
GSMUA_Achr6P21090_001	Banana	endoplasmic reticulum	66.94	66.39
CDX90537	Canola	endoplasmic reticulum	66.94	66.39
VIT_18s0001g13390.t01	Wine grape	endoplasmic reticulum	67.22	66.3
Os02t0469600-01	Rice	extracellular	68.04	66.22
EES05034	Sorghum	endoplasmic reticulum	67.49	66.04
GSMUA_Achr6P27980_001	Banana	vacuole	67.49	65.86
Zm00001d016446_P001	Maize	extracellular	67.22	65.77
Bra012733.1-P	Field mustard	endoplasmic reticulum	66.67	65.76
HORVU7Hr1G069280.1	Barley	nucleus	44.9	65.73
HORVU7Hr1G074340.1	Barley	plastid	42.98	64.46
TraesCS5D01G332200.1	Wheat	extracellular	66.94	64.46
TraesCS5B01G326500.1	Wheat	extracellular	66.94	64.46
TraesCS5A01G326100.1	Wheat	golgi	66.94	64.46
HORVU5Hr1G082810.1	Barley	vacuole	66.67	64.19
TraesCS2A01G273100.1	Wheat	golgi	66.12	63.32
TraesCS2D01G272400.1	Wheat	endoplasmic reticulum, golgi	63.91	63.22
HORVU4Hr1G082210.1	Barley	cytosol, mitochondrion, nucleus, plastid	45.18	62.6
KXG26035	Sorghum	endoplasmic reticulum, golgi, vacuole	56.75	60.95
KRH49717	Soybean	endoplasmic reticulum	27.55	56.82
HORVU2Hr1G066680.1	Barley	endoplasmic reticulum	55.92	53.7
PGSC0003DMT400079777	Potato	extracellular	55.1	51.81
Os04t0311400-01	Rice	nucleus	52.07	49.22
PGSC0003DMT400048984	Potato	extracellular	36.91	37.64
PGSC0003DMT400071690	Potato	vacuole	36.64	37.05
PGSC0003DMT400026850	Potato	extracellular	18.18	26.72

Protein Annotations

MapMan:19.4.1.1	Gene3D:3.90.70.10	MEROPS:C01.022	ncoils:Coil	GO:GO:0000323	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008234	GO:GO:0016787
GO:GO:0019538	UniProt:M0ZWD8	PFAM:PF00112	PFAM:PF08246	EnsemblPlantsGene:PGSC0003DMG400003707	PGSC:PGSC0003DMG400003707
EnsemblPlants:PGSC0003DMT400009507	PRINTS:PR00705	ScanProsite:PS00139	ScanProsite:PS00640	PANTHER:PTHR12411	PANTHER:PTHR12411:SF338
InterPro:Papain_like_cys_pep_sf	InterPro:Pept_asp_AS	InterPro:Pept_cys_AS	InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C	InterPro:Prot_inhib_I29
SMART:SM00645	SMART:SM00848	SUPFAM:SSF54001	SignalP:SignalP-noTM	UniParc:UPI00029679D8	SEG:seg

Description

Pre-pro-cysteine proteinase [Source:PGSC_GENE;Acc:PGSC0003DMG400003707]

Coordinates

chr4:+:70363354..70365693

Molecular Weight (calculated)

40122.5 Da

IEP (calculated)

6.781

GRAVY (calculated)

-0.315

Length

363 amino acids

Sequence
(BLAST)

001: MDRLFLLSLL ALALFSSAIA FSDDDPLIRQ VVSENDDNHM LNAEHHFSLF KVKFGKIYAS QEEHDHRLKV FKANLRRARR HQLLDPSAEH GITQFSDLTP
101: SEFRRTYLGL NKPRPNLNAE KAPILPTTDL PADFDWREKG AVTDVKNQGS CGSCWSFSTT GAVEGAHFLA TGELVSLSEQ QLVDCDHECD PVEKNDCDAG
201: CGGGLMTSAF EYTLKSGGLQ LEKDYPYTGK DGKCHFDKSK IAASVSNFSV VGLDEDQIAA NLLKHGPLAV GINAAWMQTY VRGVSCPLIC LKRQDHGVLL
301: VGYGSEGFAP IRLKNKPYWI IKNSWGKTWG EHGYYKICRG HNICGVDAMV STVTATHTTN PNL

Best Arabidopsis Sequence Match ( AT4G16190.1 )
(BLAST)

001: MDRVVFFFLI AATLLAGSLG STVISGEVTD GFVNPIRQVV PEENDEQLLN AEHHFTLFKS KYEKTYATQV EHDHRFRVFK ANLRRARRNQ LLDPSAVHGV
101: TQFSDLTPKE FRRKFLGLKR RGFRLPTDTQ TAPILPTSDL PTEFDWREQG AVTPVKNQGM CGSCWSFSAI GALEGAHFLA TKELVSLSEQ QLVDCDHECD
201: PAQANSCDSG CSGGLMNNAF EYALKAGGLM KEEDYPYTGR DHTACKFDKS KIVASVSNFS VVSSDEDQIA ANLVQHGPLA IAINAMWMQT YIGGVSCPYV
301: CSKSQDHGVL LVGFGSSGYA PIRLKEKPYW IIKNSWGAMW GEHGYYKICR GPHNMCGMDT MVSTVAAVHT SPK

Arabidopsis Description

RD19CProbable cysteine protease RD19C [Source:UniProtKB/Swiss-Prot;Acc:Q9SUL1]
SUBAcon: [extracellular,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.