CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 7
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61087	Soybean	endoplasmic reticulum	94.81	94.81
KRH05898	Soybean	endoplasmic reticulum, vacuole	80.33	79.46
KRH17382	Soybean	endoplasmic reticulum	79.51	79.29
VIT_04s0023g02450.t01	Wine grape	vacuole	75.41	75.2
VIT_18s0001g13400.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	75.41	74.39
VIT_18s0001g13380.t01	Wine grape	extracellular	73.22	73.42
CDY34441	Canola	endoplasmic reticulum	73.77	73.37
Bra033545.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	73.5	73.1
CDY32227	Canola	endoplasmic reticulum, extracellular, vacuole	73.5	73.1
GSMUA_Achr3P17220_001	Banana	nucleus	59.02	72.73
KRH29385	Soybean	extracellular	72.13	72.73
Solyc04g080960.2.1	Tomato	extracellular	70.77	71.35
KRH24406	Soybean	extracellular	71.04	71.23
PGSC0003DMT400009507	Potato	extracellular	69.95	70.52
VIT_18s0001g13390.t01	Wine grape	endoplasmic reticulum	70.77	70.38
GSMUA_Achr6P21090_001	Banana	endoplasmic reticulum	69.67	69.67
AT4G16190.1	Thale cress	endoplasmic reticulum, extracellular	70.77	69.44
HORVU7Hr1G069280.1	Barley	nucleus	46.45	68.55
GSMUA_Achr6P27980_001	Banana	vacuole	69.67	68.55
HORVU7Hr1G074340.1	Barley	plastid	44.54	67.36
Zm00001d016446_P001	Maize	extracellular	67.76	66.85
EES05034	Sorghum	endoplasmic reticulum	67.49	66.58
CDY09707	Canola	endoplasmic reticulum, extracellular	66.39	66.39
CDX90537	Canola	endoplasmic reticulum	66.12	66.12
Bra012733.1-P	Field mustard	endoplasmic reticulum	66.39	66.03
KXG26035	Sorghum	endoplasmic reticulum, golgi, vacuole	60.93	65.98
Os02t0469600-01	Rice	extracellular	66.67	65.42
TraesCS2A01G273100.1	Wheat	golgi	67.49	65.17
TraesCS5B01G326500.1	Wheat	extracellular	66.67	64.72
TraesCS5A01G326100.1	Wheat	golgi	66.67	64.72
TraesCS5D01G332200.1	Wheat	extracellular	66.39	64.46
HORVU5Hr1G082810.1	Barley	vacuole	66.39	64.46
HORVU4Hr1G082210.1	Barley	cytosol, mitochondrion, nucleus, plastid	45.9	64.12
TraesCS2D01G272400.1	Wheat	endoplasmic reticulum, golgi	64.21	64.03
KRH49717	Soybean	endoplasmic reticulum	27.6	57.39
HORVU2Hr1G066680.1	Barley	endoplasmic reticulum	56.01	54.23
KRG91982	Soybean	endoplasmic reticulum, golgi, vacuole	49.45	51.71
Os04t0311400-01	Rice	nucleus	53.28	50.78
KRH34798	Soybean	endoplasmic reticulum, golgi	51.91	50.0
KRH12540	Soybean	extracellular	38.52	39.83
KRH13188	Soybean	peroxisome	9.56	39.33
KRH02604	Soybean	vacuole	37.7	39.09
KRG98609	Soybean	mitochondrion	29.23	35.91
KRH37496	Soybean	vacuole	37.43	33.74
KRG99207	Soybean	cytosol, nucleus, plastid	24.04	32.96
KRH49642	Soybean	endoplasmic reticulum, extracellular	6.28	23.96
KRH68369	Soybean	nucleus	22.68	23.25
KRG96636	Soybean	nucleus	22.13	22.75

Protein Annotations

EntrezGene:100778716	MapMan:19.4.1.1	Gene3D:3.90.70.10	EMBL:ACUP02003389	EMBL:BT095815	MEROPS:C01.022
UniProt:C6TDZ7	EnsemblPlantsGene:GLYMA_06G027700	GO:GO:0003674	GO:GO:0003824	GO:GO:0004197	GO:GO:0005575
GO:GO:0005576	GO:GO:0005615	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005764
GO:GO:0005773	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008234
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	EnsemblPlants:KRH51767
ProteinID:KRH51767	ProteinID:KRH51767.1	PFAM:PF00112	PFAM:PF08246	PRINTS:PR00705	ScanProsite:PS00139
ScanProsite:PS00639	ScanProsite:PS00640	PANTHER:PTHR12411	PANTHER:PTHR12411:SF365	InterPro:Papain_like_cys_pep_sf	InterPro:Pept_asp_AS
InterPro:Pept_cys_AS	InterPro:Pept_his_AS	InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C	InterPro:Prot_inhib_I29	SMART:SM00645
SMART:SM00848	SUPFAM:SSF54001	SignalP:SignalP-noTM	UniParc:UPI0001B16962	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:2155900..2157973

Molecular Weight (calculated)

40224.5 Da

IEP (calculated)

6.143

GRAVY (calculated)

-0.262

Length

366 amino acids

Sequence
(BLAST)

001: MANPSLLFFS LLLLSATVAA AERIDDEDDL LIRQVVPDAE DHHLLNAEHH FSAFKTKFGK TYATQEEHDH RFRIFKNNLL RAKSHQKLDP SAVHGVTRFS
101: DLTPAEFRRQ FLGLKPLRLP SDAQKAPILP TNDLPTDFDW REHGAVTGVK NQGSCGSCWS FSAVGALEGA HFLSTGELVS LSEQQLVDCD HECDPEERGA
201: CDSGCNGGLM TTAFEYTLQA GGLMREKDYP YTGRDRGPCK FDKSKVAASV ANFSVVSLDE EQIAANLVQN GPLAVGINAV FMQTYIGGVS CPYICGKHLD
301: HGVLLVGYGS GAYAPIRFKE KPYWIIKNSW GESWGEEGYY KICRGRNVCG VDSMVSTVAA IHVSNN

Best Arabidopsis Sequence Match ( AT4G39090.1 )
(BLAST)

001: MDRLKLYFSV FVLSFFIVSV SSSDVNDGDD LVIRQVVGGA EPQVLTSEDH FSLFKRKFGK VYASNEEHDY RFSVFKANLR RARRHQKLDP SATHGVTQFS
101: DLTRSEFRKK HLGVRSGFKL PKDANKAPIL PTENLPEDFD WRDHGAVTPV KNQGSCGSCW SFSATGALEG ANFLATGKLV SLSEQQLVDC DHECDPEEAD
201: SCDSGCNGGL MNSAFEYTLK TGGLMKEEDY PYTGKDGKTC KLDKSKIVAS VSNFSVISID EEQIAANLVK NGPLAVAINA GYMQTYIGGV SCPYICTRRL
301: NHGVLLVGYG AAGYAPARFK EKPYWIIKNS WGETWGENGF YKICKGRNIC GVDSMVSTVA ATVSTTAH

Arabidopsis Description

RD19ARD19A [Source:UniProtKB/TrEMBL;Acc:A0A178V006]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.