Factsheet for TraesCS2A01G273100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	endoplasmic reticulum

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G272400.1	Wheat	endoplasmic reticulum, golgi	94.99	98.09
HORVU2Hr1G066680.1	Barley	endoplasmic reticulum	79.95	80.16
KXG26035	Sorghum	endoplasmic reticulum, golgi, vacuole	70.98	79.59
TraesCS5A01G326100.1	Wheat	golgi	75.73	76.13
GSMUA_Achr3P17220_001	Banana	nucleus	58.31	74.41
GSMUA_Achr6P27980_001	Banana	vacuole	69.39	70.7
GSMUA_Achr6P21090_001	Banana	endoplasmic reticulum	68.07	70.49
KRH51767	Soybean	endoplasmic reticulum	65.17	67.49
KRH61087	Soybean	endoplasmic reticulum	64.64	66.94
KRH17382	Soybean	endoplasmic reticulum	64.38	66.48
Solyc04g080960.2.1	Tomato	extracellular	63.59	66.39
PGSC0003DMT400009507	Potato	extracellular	63.32	66.12
KRH05898	Soybean	endoplasmic reticulum, vacuole	64.38	65.95
VIT_04s0023g02450.t01	Wine grape	vacuole	63.32	65.4
VIT_18s0001g13400.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	63.85	65.23
VIT_18s0001g13380.t01	Wine grape	extracellular	62.53	64.93
CDY32227	Canola	endoplasmic reticulum, extracellular, vacuole	62.27	64.13
Bra033545.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	62.27	64.13
VIT_18s0001g13390.t01	Wine grape	endoplasmic reticulum	62.27	64.13
CDY34441	Canola	endoplasmic reticulum	62.01	63.86
AT4G16190.1	Thale cress	endoplasmic reticulum, extracellular	62.01	63.0
Os04t0311400-01	Rice	nucleus	62.8	61.98
CDX90537	Canola	endoplasmic reticulum	58.58	60.66
CDY09707	Canola	endoplasmic reticulum, extracellular	58.31	60.38
Bra012733.1-P	Field mustard	endoplasmic reticulum	58.31	60.05
TraesCS2A01G187400.1	Wheat	extracellular	51.19	53.59
KRH49717	Soybean	endoplasmic reticulum	24.54	52.84
TraesCS5A01G210100.1	Wheat	unclear	34.3	35.62
TraesCS4A01G252900.1	Wheat	extracellular	21.11	22.79
TraesCS4A01G252800.1	Wheat	unclear	20.05	22.09
TraesCS4A01G252700.1	Wheat	extracellular	19.79	21.74

Protein Annotations

MapMan:19.4.1.1	Gene3D:3.90.70.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008234	GO:GO:0016787	GO:GO:0019538	PFAM:PF00112
PFAM:PF08246	PRINTS:PR00705	ScanProsite:PS00139	ScanProsite:PS00639	ScanProsite:PS00640	PANTHER:PTHR12411
PANTHER:PTHR12411:SF380	InterPro:Papain_like_cys_pep_sf	InterPro:Pept_asp_AS	InterPro:Pept_cys_AS	InterPro:Pept_his_AS	InterPro:Peptidase_C1A
InterPro:Peptidase_C1A_C	InterPro:Prot_inhib_I29	SMART:SM00645	SMART:SM00848	SUPFAM:SSF54001	SignalP:SignalP-noTM
EnsemblPlantsGene:TraesCS2A01G273100	EnsemblPlants:TraesCS2A01G273100.1	TIGR:cd02248	SEG:seg	:	:

Description

No Description!

Coordinates

chr2A:+:447284788..447287441

Molecular Weight (calculated)

41448.1 Da

IEP (calculated)

7.340

GRAVY (calculated)

-0.326

Length

379 amino acids

Sequence
(BLAST)

001: MARPRLRLLL VAAAVLLLLH PALSSAAEGL EDPLIEQVVG GDAENELELN AEAHFASFVR RFGKSYRDAD EHAHRLSVFR DNLRRARRHQ RLDPSAVHGI
101: TKFSDLTPDE FRERFLGLRK SRRSFLKGIS GSAHDAPALP TDGLPTEFDW REHGAVGPVK DQGSCGSCWS FSTSGALEGA NYLATGKLEV LSEQQLVDCD
201: HECDPSEPRA CDAGCNGGLM TTAFSYLAKA GGLETEKDYP YTGRNSACKF DKSKIAAQVK NFSTVAIDED QIAANLVKHG PLAIGINAVF MQTYIGGVSC
301: PYICGRHLDH GVLLVGYGSA GYAPLRFKEK PYWIIKNSWG ENWGESGYYK ICRGPHVKNK CGVDSMVSTV TAIHTSKKE

Best Arabidopsis Sequence Match ( AT4G39090.1 )
(BLAST)

001: MDRLKLYFSV FVLSFFIVSV SSSDVNDGDD LVIRQVVGGA EPQVLTSEDH FSLFKRKFGK VYASNEEHDY RFSVFKANLR RARRHQKLDP SATHGVTQFS
101: DLTRSEFRKK HLGVRSGFKL PKDANKAPIL PTENLPEDFD WRDHGAVTPV KNQGSCGSCW SFSATGALEG ANFLATGKLV SLSEQQLVDC DHECDPEEAD
201: SCDSGCNGGL MNSAFEYTLK TGGLMKEEDY PYTGKDGKTC KLDKSKIVAS VSNFSVISID EEQIAANLVK NGPLAVAINA GYMQTYIGGV SCPYICTRRL
301: NHGVLLVGYG AAGYAPARFK EKPYWIIKNS WGETWGENGF YKICKGRNIC GVDSMVSTVA ATVSTTAH

Arabidopsis Description

RD19ARD19A [Source:UniProtKB/TrEMBL;Acc:A0A178V006]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.