Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G062400.1 | Wheat | extracellular | 96.01 | 95.74 |
| HORVU4Hr1G010300.11 | Barley | extracellular | 94.59 | 93.79 |
| TraesCS4A01G252800.1 | Wheat | unclear | 78.92 | 80.52 |
| TraesCS4A01G252700.1 | Wheat | extracellular | 76.64 | 77.97 |
| KXG36303 | Sorghum | vacuole | 74.36 | 73.52 |
| CDY64994 | Canola | cytosol, nucleus, vacuole | 51.57 | 72.98 |
| Zm00001d021615_P002 | Maize | extracellular, plasma membrane, vacuole | 68.66 | 65.67 |
| KRG96636 | Soybean | nucleus | 66.38 | 65.45 |
| PGSC0003DMT400026850 | Potato | extracellular | 45.58 | 64.78 |
| Bra030498.1-P | Field mustard | vacuole | 65.81 | 64.71 |
| KRH68369 | Soybean | nucleus | 65.81 | 64.71 |
| AT1G02305.1 | Thale cress | extracellular, vacuole | 65.24 | 63.26 |
| CDY61859 | Canola | extracellular, golgi, vacuole | 65.24 | 62.91 |
| CDX85150 | Canola | extracellular, golgi, vacuole | 60.68 | 62.46 |
| AT4G01610.1 | Thale cress | extracellular, golgi, vacuole | 63.82 | 62.4 |
| Bra036321.1-P | Field mustard | vacuole | 62.96 | 61.73 |
| CDY07129 | Canola | extracellular | 62.96 | 61.73 |
| GSMUA_Achr3P24740_001 | Banana | vacuole | 62.96 | 61.56 |
| GSMUA_Achr8P06100_001 | Banana | vacuole | 64.1 | 61.31 |
| CDY58223 | Canola | vacuole | 62.39 | 61.17 |
| Solyc02g069090.2.1 | Tomato | extracellular | 61.25 | 61.08 |
| Solyc02g069110.2.1 | Tomato | extracellular, golgi, vacuole | 60.11 | 59.6 |
| CDY64824 | Canola | cytosol, mitochondrion, vacuole | 28.77 | 57.71 |
| Solyc02g069100.2.1 | Tomato | plastid | 57.55 | 57.06 |
| AT1G02300.1 | Thale cress | extracellular | 60.97 | 56.46 |
| VIT_07s0005g02820.t01 | Wine grape | vacuole | 62.68 | 56.12 |
| KRH49642 | Soybean | endoplasmic reticulum, extracellular | 13.96 | 51.04 |
| Os05t0310500-02 | Rice | extracellular | 23.08 | 41.97 |
| CDY38163 | Canola | golgi, vacuole | 18.23 | 40.0 |
| Bra039903.1-P | Field mustard | extracellular, golgi, vacuole | 22.51 | 34.35 |
| TraesCS5A01G210100.1 | Wheat | unclear | 24.79 | 23.84 |
| TraesCS5A01G326100.1 | Wheat | golgi | 23.36 | 21.75 |
| TraesCS2A01G187400.1 | Wheat | extracellular | 21.94 | 21.27 |
| TraesCS2A01G273100.1 | Wheat | golgi | 22.79 | 21.11 |
| CDY14798 | Canola | extracellular | 1.99 | 5.74 |
Protein Annotations
| MapMan:19.4.1.1 | Gene3D:3.90.70.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004197 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008234 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0050790 |
| PFAM:PF00112 | PFAM:PF08127 | PRINTS:PR00705 | ScanProsite:PS00139 | ScanProsite:PS00639 | PANTHER:PTHR12411 |
| PANTHER:PTHR12411:SF516 | InterPro:Papain_like_cys_pep_sf | InterPro:Pept_cys_AS | InterPro:Pept_his_AS | InterPro:Peptidase_C1A | InterPro:Peptidase_C1A_C |
| InterPro:Propeptide_C1A | SMART:SM00645 | SUPFAM:SSF54001 | SignalP:SignalP-noTM | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS4A01G252900 |
| EnsemblPlants:TraesCS4A01G252900.1 | TIGR:cd02620 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4A:+:565302085..565305616
Molecular Weight (calculated)
38128.2 Da
IEP (calculated)
6.730
GRAVY (calculated)
-0.171
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGVGVSLAL LVAVVLSAVA AAPQLAGTAK AEHSLGIIQK DIIQTVNKHP NAGWTAGHNP YFANYTIEQF KHILGVKPTP PGLLAGVPIK IHPEMDLPKE
101: FDARTQWSSC STIGNILDQG HCGACWAFAA VEALQDRFCI HLNMSVSLSV NDLLACCGFL CGSGCNGGYP ISAWRYFRRS GVVTEECDPY FDQTGCQHPG
201: CEPAYPTPKC QRKCKVENQA WKENKHFSVN AYRVHSNPHD IMAEVYKNGP VEVAFTVYED FAHYKSGVYK HITGGVMGGH AVKLIGWGTS DAGEDYWLLA
301: NQWNRGWGDD GYFKIIRGEN ECGIEGDVTA GMPSTKNTAR NNDVAFGTAI L
101: FDARTQWSSC STIGNILDQG HCGACWAFAA VEALQDRFCI HLNMSVSLSV NDLLACCGFL CGSGCNGGYP ISAWRYFRRS GVVTEECDPY FDQTGCQHPG
201: CEPAYPTPKC QRKCKVENQA WKENKHFSVN AYRVHSNPHD IMAEVYKNGP VEVAFTVYED FAHYKSGVYK HITGGVMGGH AVKLIGWGTS DAGEDYWLLA
301: NQWNRGWGDD GYFKIIRGEN ECGIEGDVTA GMPSTKNTAR NNDVAFGTAI L
001: MADNCIRLLH SASVFFCLGL LISSFNLLQG IAAENLSKQK LTSWILQNEI VKEVNENPNA GWKASFNDRF ANATVAEFKR LLGVKPTPKT EFLGVPIVSH
101: DISLKLPKEF DARTAWSQCT SIGRILDQGH CGSCWAFGAV ESLSDRFCIK YNMNVSLSVN DLLACCGFLC GQGCNGGYPI AAWRYFKHHG VVTEECDPYF
201: DNTGCSHPGC EPAYPTPKCA RKCVSGNQLW RESKHYGVSA YKVRSHPDDI MAEVYKNGPV EVAFTVYEDF AHYKSGVYKH ITGTNIGGHA VKLIGWGTSD
301: DGEDYWLLAN QWNRSWGDDG YFKIRRGTNE CGIEHGVVAG LPSDRNVVKG ITTSDDLLVS SF
101: DISLKLPKEF DARTAWSQCT SIGRILDQGH CGSCWAFGAV ESLSDRFCIK YNMNVSLSVN DLLACCGFLC GQGCNGGYPI AAWRYFKHHG VVTEECDPYF
201: DNTGCSHPGC EPAYPTPKCA RKCVSGNQLW RESKHYGVSA YKVRSHPDDI MAEVYKNGPV EVAFTVYEDF AHYKSGVYKH ITGTNIGGHA VKLIGWGTSD
301: DGEDYWLLAN QWNRSWGDDG YFKIRRGTNE CGIEHGVVAG LPSDRNVVKG ITTSDDLLVS SF
Arabidopsis Description
CATHB2Cathepsin B-like protease 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VC9]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.