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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, vacuole

Predictor Summary:
  • nucleus 1
  • extracellular 4
  • golgi 5
  • plasma membrane 4
  • endoplasmic reticulum 4
  • vacuole 5
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi, vacuole
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:cytosol
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:golgi
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra039903.1-P Field mustard extracellular, golgi, vacuole 85.0 59.13
CDY64824 Canola cytosol, mitochondrion, vacuole 41.88 38.29
CDY61859 Canola extracellular, golgi, vacuole 68.75 30.22
Os05t0310500-02 Rice extracellular 33.12 27.46
AT1G02305.1 Thale cress extracellular, vacuole 59.38 26.24
CDX85150 Canola extracellular, golgi, vacuole 53.12 24.93
CDY58223 Canola vacuole 53.75 24.02
AT1G02300.1 Thale cress extracellular 56.88 24.01
CDY07129 Canola extracellular 53.12 23.74
GSMUA_Achr3P24740_001 Banana vacuole 43.12 19.22
KXG36303 Sorghum vacuole 42.5 19.15
TraesCS4B01G062400.1 Wheat extracellular 41.88 19.03
GSMUA_Achr8P06100_001 Banana vacuole 42.5 18.53
TraesCS4D01G061400.1 Wheat extracellular 39.38 18.37
TraesCS4A01G252700.1 Wheat extracellular 39.38 18.26
TraesCS4A01G252900.1 Wheat extracellular 40.0 18.23
HORVU4Hr1G010300.11 Barley extracellular 40.0 18.08
TraesCS4B01G062600.1 Wheat vacuole 40.62 18.06
TraesCS4B01G062500.1 Wheat extracellular 38.12 17.78
TraesCS4A01G252800.1 Wheat unclear 38.12 17.73
VIT_07s0005g02820.t01 Wine grape vacuole 43.12 17.6
HORVU4Hr1G010360.3 Barley vacuole 39.38 15.67
HORVU4Hr1G010390.14 Barley vacuole 38.75 11.83
KRH49642 Soybean endoplasmic reticulum, extracellular 6.25 10.42
Zm00001d022297_P001 Maize cytosol, extracellular, nucleus 3.75 8.22
CDY64994 Canola cytosol, nucleus, vacuole 12.5 8.06
CDX99593 Canola endoplasmic reticulum, golgi 15.62 7.29
CDX88753 Canola vacuole 15.62 7.16
CDX90310 Canola vacuole 16.25 7.05
CDY56961 Canola endoplasmic reticulum 15.62 6.87
CDX73424 Canola extracellular 15.62 6.87
CDY34441 Canola endoplasmic reticulum 15.62 6.79
CDY71205 Canola vacuole 15.62 6.79
CDY15894 Canola endoplasmic reticulum 15.0 6.63
CDY32227 Canola endoplasmic reticulum, extracellular, vacuole 15.0 6.52
CDY09707 Canola endoplasmic reticulum, extracellular 13.75 6.01
CDX90537 Canola endoplasmic reticulum 13.12 5.74
CDY41960 Canola endoplasmic reticulum, extracellular, vacuole 13.12 5.72
CDX71035 Canola vacuole 11.88 5.54
CDX88755 Canola extracellular, plasma membrane, vacuole 13.12 5.13
CDX80173 Canola endoplasmic reticulum 11.25 5.03
CDY09216 Canola vacuole 11.25 5.01
CDX71045 Canola endoplasmic reticulum 11.25 4.97
CDY09213 Canola vacuole 10.62 4.74
CDY31550 Canola endoplasmic reticulum, extracellular, vacuole 10.62 4.74
CDY13816 Canola cytosol 8.12 4.59
CDY42605 Canola plastid 5.62 4.25
CDY14798 Canola extracellular 3.12 4.1
CDX82031 Canola nucleus 5.62 3.4
CDY19784 Canola cytosol, nucleus, plastid 5.0 3.33
Protein Annotations
Gene3D:3.90.70.10MapMan:35.1GO:A0A078HMX6UniProt:A0A078HMX6EnsemblPlants:CDY38163ProteinID:CDY38163
ProteinID:CDY38163.1GO:GO:0003674GO:GO:0003824GO:GO:0004197GO:GO:0006508GO:GO:0008150
GO:GO:0008152GO:GO:0008234GO:GO:0016787GO:GO:0019538GO:GO:0050790EnsemblPlantsGene:GSBRNA2T00065464001
PFAM:PF08127PANTHER:PTHR12411PANTHER:PTHR12411:SF516InterPro:Papain_like_cys_pep_sfInterPro:Peptidase_C1AInterPro:Propeptide_C1A
SUPFAM:SSF54001SignalP:SignalP-noTMUniParc:UPI0004EDAE05:::
Description
BnaA07g02200DBnaA07g02200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HMX6]
Coordinates
chrLK032417:-:230122..231558
Molecular Weight (calculated)
18097.6 Da
IEP (calculated)
8.256
GRAVY (calculated)
-0.234
Length
160 amino acids
Sequence
(BLAST)
001: MAEHHHRIRV YLASAILLLA VINTNEIVKE VNENPNAGWT AAFNDRFVNS TVAEFKRLLG VKPTPKNEFL GVPVVSHDIS LKLTKEFDAR TAWSQCSSIG
101: RILGFGLRFT VWEMIGWSPE CARYPADRDT SEGSVLHWKQ RRSGEVLGLS ESVYTKHEPF
Best Arabidopsis Sequence Match ( AT1G02305.1 )
(BLAST)
001: MADNCIRLLH SASVFFCLGL LISSFNLLQG IAAENLSKQK LTSWILQNEI VKEVNENPNA GWKASFNDRF ANATVAEFKR LLGVKPTPKT EFLGVPIVSH
101: DISLKLPKEF DARTAWSQCT SIGRILDQGH CGSCWAFGAV ESLSDRFCIK YNMNVSLSVN DLLACCGFLC GQGCNGGYPI AAWRYFKHHG VVTEECDPYF
201: DNTGCSHPGC EPAYPTPKCA RKCVSGNQLW RESKHYGVSA YKVRSHPDDI MAEVYKNGPV EVAFTVYEDF AHYKSGVYKH ITGTNIGGHA VKLIGWGTSD
301: DGEDYWLLAN QWNRSWGDDG YFKIRRGTNE CGIEHGVVAG LPSDRNVVKG ITTSDDLLVS SF
Arabidopsis Description
CATHB2Cathepsin B-like protease 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VC9]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.