Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41960 | Canola | endoplasmic reticulum, extracellular, vacuole | 59.02 | 19.62 |
| CDY71205 | Canola | vacuole | 59.02 | 19.57 |
| CDX90310 | Canola | vacuole | 59.02 | 19.51 |
| CDY15894 | Canola | endoplasmic reticulum | 49.18 | 16.57 |
| CDX99593 | Canola | endoplasmic reticulum, golgi | 40.16 | 14.29 |
| CDY32227 | Canola | endoplasmic reticulum, extracellular, vacuole | 41.8 | 13.86 |
| CDY34441 | Canola | endoplasmic reticulum | 41.8 | 13.86 |
| CDX90537 | Canola | endoplasmic reticulum | 37.7 | 12.57 |
| CDY09707 | Canola | endoplasmic reticulum, extracellular | 37.7 | 12.57 |
| CDY13816 | Canola | cytosol | 27.05 | 11.66 |
| CDX82031 | Canola | nucleus | 22.95 | 10.57 |
| CDX88753 | Canola | vacuole | 29.51 | 10.32 |
| CDX71045 | Canola | endoplasmic reticulum | 28.69 | 9.67 |
| CDX71035 | Canola | vacuole | 27.05 | 9.62 |
| CDY31550 | Canola | endoplasmic reticulum, extracellular, vacuole | 27.87 | 9.47 |
| CDX80173 | Canola | endoplasmic reticulum | 27.05 | 9.22 |
| CDY09213 | Canola | vacuole | 27.05 | 9.19 |
| CDY09216 | Canola | vacuole | 26.23 | 8.91 |
| CDY56961 | Canola | endoplasmic reticulum | 26.23 | 8.79 |
| CDX73424 | Canola | extracellular | 26.23 | 8.79 |
| CDX88755 | Canola | extracellular, plasma membrane, vacuole | 28.69 | 8.56 |
| CDY42605 | Canola | plastid | 11.48 | 6.6 |
| CDY38163 | Canola | golgi, vacuole | 4.1 | 3.12 |
| Os05t0310500-02 | Rice | extracellular | 4.1 | 2.59 |
| TraesCS4A01G252700.1 | Wheat | extracellular | 6.56 | 2.32 |
| KXG36303 | Sorghum | vacuole | 6.56 | 2.25 |
| TraesCS4D01G061400.1 | Wheat | extracellular | 5.74 | 2.04 |
| TraesCS4B01G062500.1 | Wheat | extracellular | 5.74 | 2.04 |
| TraesCS4A01G252800.1 | Wheat | unclear | 5.74 | 2.03 |
| TraesCS4A01G252900.1 | Wheat | extracellular | 5.74 | 1.99 |
| HORVU4Hr1G010360.3 | Barley | vacuole | 6.56 | 1.99 |
| TraesCS4B01G062400.1 | Wheat | extracellular | 5.74 | 1.99 |
| TraesCS4B01G062600.1 | Wheat | vacuole | 5.74 | 1.94 |
| HORVU4Hr1G010300.11 | Barley | extracellular | 4.92 | 1.69 |
| Solyc02g069110.2.1 | Tomato | extracellular, golgi, vacuole | 4.92 | 1.69 |
| CDX85150 | Canola | extracellular, golgi, vacuole | 4.1 | 1.47 |
| Solyc02g069100.2.1 | Tomato | plastid | 4.1 | 1.41 |
| CDY07129 | Canola | extracellular | 4.1 | 1.4 |
| CDY58223 | Canola | vacuole | 4.1 | 1.4 |
| GSMUA_Achr3P24740_001 | Banana | vacuole | 4.1 | 1.39 |
| Zm00001d022297_P001 | Maize | cytosol, extracellular, nucleus | 0.82 | 1.37 |
| GSMUA_Achr8P06100_001 | Banana | vacuole | 4.1 | 1.36 |
| HORVU4Hr1G010390.14 | Barley | vacuole | 4.92 | 1.15 |
| CDY61859 | Canola | extracellular, golgi, vacuole | 3.28 | 1.1 |
| Solyc02g069090.2.1 | Tomato | extracellular | 2.46 | 0.85 |
| CDY64824 | Canola | cytosol, mitochondrion, vacuole | 0.82 | 0.57 |
| CDY19784 | Canola | cytosol, nucleus, plastid | 0.82 | 0.42 |
| PGSC0003DMT400026850 | Potato | extracellular | 0.82 | 0.4 |
| CDY64994 | Canola | cytosol, nucleus, vacuole | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.90.70.10 | MapMan:35.1 | GO:A0A078FR46 | UniProt:A0A078FR46 | EnsemblPlants:CDY14798 | ProteinID:CDY14798 |
| ProteinID:CDY14798.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008234 | GO:GO:0016787 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00084667001 | PFAM:PF08246 | PANTHER:PTHR12411 |
| PANTHER:PTHR12411:SF338 | InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C1A | InterPro:Prot_inhib_I29 | SMART:SM00848 | SUPFAM:SSF54001 |
| SignalP:SignalP-noTM | UniParc:UPI0004EE9F5F | : | : | : | : |
Description
BnaC04g47950DBnaC04g47950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FR46]
Coordinates
chrLK032047:+:451096..451464
Molecular Weight (calculated)
14012.6 Da
IEP (calculated)
10.134
GRAVY (calculated)
-0.529
Length
122 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRLKLSLSV FALLFNVVSA SSDGNEGDDL VINQVVDGGA EPNVLSSEDH FSLFKKRFGK VYASREEHDY RFSVFKSNLR RARRHQKLDP SARHGVTQFS
101: DLRKGGFAEY FFRHEAKRMM IP
101: DLRKGGFAEY FFRHEAKRMM IP
001: MDRLKLYFSV FVLSFFIVSV SSSDVNDGDD LVIRQVVGGA EPQVLTSEDH FSLFKRKFGK VYASNEEHDY RFSVFKANLR RARRHQKLDP SATHGVTQFS
101: DLTRSEFRKK HLGVRSGFKL PKDANKAPIL PTENLPEDFD WRDHGAVTPV KNQGSCGSCW SFSATGALEG ANFLATGKLV SLSEQQLVDC DHECDPEEAD
201: SCDSGCNGGL MNSAFEYTLK TGGLMKEEDY PYTGKDGKTC KLDKSKIVAS VSNFSVISID EEQIAANLVK NGPLAVAINA GYMQTYIGGV SCPYICTRRL
301: NHGVLLVGYG AAGYAPARFK EKPYWIIKNS WGETWGENGF YKICKGRNIC GVDSMVSTVA ATVSTTAH
101: DLTRSEFRKK HLGVRSGFKL PKDANKAPIL PTENLPEDFD WRDHGAVTPV KNQGSCGSCW SFSATGALEG ANFLATGKLV SLSEQQLVDC DHECDPEEAD
201: SCDSGCNGGL MNSAFEYTLK TGGLMKEEDY PYTGKDGKTC KLDKSKIVAS VSNFSVISID EEQIAANLVK NGPLAVAINA GYMQTYIGGV SCPYICTRRL
301: NHGVLLVGYG AAGYAPARFK EKPYWIIKNS WGETWGENGF YKICKGRNIC GVDSMVSTVA ATVSTTAH
Arabidopsis Description
RD19ARD19A [Source:UniProtKB/TrEMBL;Acc:A0A178V006]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.