CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99593	Canola	endoplasmic reticulum, golgi	53.77	33.24
Bra011877.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	56.13	32.43
CDY41960	Canola	endoplasmic reticulum, extracellular, vacuole	56.13	32.43
AT4G39090.1	Thale cress	endoplasmic reticulum, golgi, vacuole	56.13	32.34
CDX90310	Canola	vacuole	56.13	32.25
CDY15894	Canola	endoplasmic reticulum	54.25	31.77
CDY71205	Canola	vacuole	54.72	31.52
KRH24406	Soybean	extracellular	54.25	31.51
Solyc01g110110.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	54.25	31.17
KRH29385	Soybean	extracellular	53.3	31.13
PGSC0003DMT400079506	Potato	endoplasmic reticulum, extracellular, vacuole	53.77	30.98
VIT_03s0038g00280.t01	Wine grape	endoplasmic reticulum	54.25	30.5
CDY13816	Canola	cytosol	40.09	30.04
CDY32227	Canola	endoplasmic reticulum, extracellular, vacuole	51.89	29.89
CDY34441	Canola	endoplasmic reticulum	51.42	29.62
CDX90537	Canola	endoplasmic reticulum	50.0	28.96
CDY09707	Canola	endoplasmic reticulum, extracellular	48.58	28.14
CDX82031	Canola	nucleus	27.83	22.26
CDY56961	Canola	endoplasmic reticulum	38.21	22.25
CDX73424	Canola	extracellular	37.74	21.98
CDY19784	Canola	cytosol, nucleus, plastid	23.58	20.83
CDY09213	Canola	vacuole	32.55	19.22
CDY09216	Canola	vacuole	32.08	18.94
CDY31550	Canola	endoplasmic reticulum, extracellular, vacuole	31.13	18.38
CDX80173	Canola	endoplasmic reticulum	30.66	18.16
CDX88753	Canola	vacuole	23.58	14.33
CDY64824	Canola	cytosol, mitochondrion, vacuole	11.79	14.29
CDX71035	Canola	vacuole	20.28	12.54
CDY64994	Canola	cytosol, nucleus, vacuole	14.62	12.5
CDX71045	Canola	endoplasmic reticulum	20.28	11.88
CDY14798	Canola	extracellular	6.6	11.48
CDX85150	Canola	extracellular, golgi, vacuole	16.04	9.97
CDY07129	Canola	extracellular	16.51	9.78
CDY58223	Canola	vacuole	16.51	9.78
CDY61859	Canola	extracellular, golgi, vacuole	16.51	9.62
CDX88755	Canola	extracellular, plasma membrane, vacuole	12.26	6.36
CDY38163	Canola	golgi, vacuole	4.25	5.62

Protein Annotations

Gene3D:3.90.70.10	MapMan:50.3.4	GO:A0A078HVX2	UniProt:A0A078HVX2	EnsemblPlants:CDY42605	ProteinID:CDY42605
ProteinID:CDY42605.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008234	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00075111001	PFAM:PF00112	ScanProsite:PS00139
PANTHER:PTHR12411	PANTHER:PTHR12411:SF519	InterPro:Papain_like_cys_pep_sf	InterPro:Pept_cys_AS	InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C
SMART:SM00645	SUPFAM:SSF54001	UniParc:UPI0004EE4976	:	:	:

Description

BnaC01g00170DBnaC01g00170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HVX2]

Coordinates

chrLK032530:-:57956..59305

Molecular Weight (calculated)

23240.4 Da

IEP (calculated)

7.407

GRAVY (calculated)

-0.460

Length

212 amino acids

Sequence
(BLAST)

001: MPNKYLPISP TKLIKSFYIH TPIHTITVAS RCFILRRSLY SVQEQVRKGL RFRGGARLQI LRFQSQSEAS EAPPEDGSLC ASRRHAGGFK LPKDANKAPI
101: EDFDWRDHGA VTPVKNQGSC GSCWSFSATG ALEGANFLAT GKLVSLSEQQ LVDCDHECDP EETGSCDSGC NGGLMNSAFE YALKTGGLMR EEDYPRLQAR
201: QVQDPAVSTT AH

Best Arabidopsis Sequence Match ( AT2G21430.1 )
(BLAST)

001: MDYHLRVLFS VSLIFVFVSV SVCGDEDVLI RQVVDETEPK VLSSEDHFTL FKKKFGKVYG SIEEHYYRFS VFKANLLRAM RHQKMDPSAR HGVTQFSDLT
101: RSEFRRKHLG VKGGFKLPKD ANQAPILPTQ NLPEEFDWRD RGAVTPVKNQ GSCGSCWSFS TTGALEGAHF LATGKLVSLS EQQLVDCDHE CDPEEEGSCD
201: SGCNGGLMNS AFEYTLKTGG LMREKDYPYT GTDGGSCKLD RSKIVASVSN FSVVSINEDQ IAANLIKNGP LAVAINAAYM QTYIGGVSCP YICSRRLNHG
301: VLLVGYGSAG FSQARLKEKP YWIIKNSWGE SWGENGFYKI CKGRNICGVD SLVSTVAATT S

Arabidopsis Description

RD19BProbable cysteine protease RD19B [Source:UniProtKB/Swiss-Prot;Acc:P43295]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.