Factsheet for VIT_03s0038g00280.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
golgi 5
plasma membrane 5
endoplasmic reticulum 7
vacuole 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079506	Potato	endoplasmic reticulum, extracellular, vacuole	76.66	78.53
KRH29385	Soybean	extracellular	74.54	77.41
Solyc01g110110.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	75.6	77.24
AT4G39090.1	Thale cress	endoplasmic reticulum, golgi, vacuole	75.07	76.9
Bra011877.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	74.54	76.57
CDY41960	Canola	endoplasmic reticulum, extracellular, vacuole	74.54	76.57
CDX99593	Canola	endoplasmic reticulum, golgi	68.7	75.51
KRH24406	Soybean	extracellular	72.94	75.34
CDX90310	Canola	vacuole	73.21	74.8
VIT_18s0001g13400.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	73.21	74.39
VIT_04s0023g02450.t01	Wine grape	vacuole	72.15	74.11
Bra030299.1-P	Field mustard	endoplasmic reticulum	70.82	73.76
VIT_18s0001g13380.t01	Wine grape	extracellular	71.35	73.7
CDY15894	Canola	endoplasmic reticulum	70.29	73.2
AT2G21430.1	Thale cress	endoplasmic reticulum	69.76	72.85
CDY71205	Canola	vacuole	70.82	72.55
Bra031189.1-P	Field mustard	nucleus	58.09	69.75
VIT_18s0001g13390.t01	Wine grape	endoplasmic reticulum	67.9	69.57
CDY13816	Canola	cytosol	51.72	68.9
Bra010706.1-P	Field mustard	vacuole	73.21	61.47
CDX82031	Canola	nucleus	41.64	59.25
CDY42605	Canola	plastid	30.5	54.25
VIT_08s0007g05150.t01	Wine grape	cytosol	10.34	48.75
VIT_13s0019g05120.t01	Wine grape	extracellular, golgi, vacuole	48.28	48.53
VIT_16s0098g00930.t01	Wine grape	cytosol	10.08	44.19
VIT_05s0049g01580.t01	Wine grape	cytosol, mitochondrion, nucleus	10.08	44.19
VIT_11s0016g01070.t01	Wine grape	extracellular	37.4	38.95
VIT_15s0024g01100.t01	Wine grape	endoplasmic reticulum	14.06	27.04
VIT_07s0005g02820.t01	Wine grape	vacuole	21.75	20.92

Protein Annotations

EntrezGene:100233049	wikigene:100233049	MapMan:19.4.1.1	Gene3D:3.90.70.10	ProteinID:ABX79341	ProteinID:ABX79341.1
MEROPS:C01.022	ProteinID:CCB60718	ProteinID:CCB60718.1	EntrezGene:CYSP	wikigene:CYSP	EMBL:EU280160
UniProt:F6I1A2	EMBL:FN596508	GO:GO:0003674	GO:GO:0003824	GO:GO:0004197	GO:GO:0005575
GO:GO:0005576	GO:GO:0005615	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005764
GO:GO:0005773	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008234
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	PFAM:PF00112
PFAM:PF08246	PRINTS:PR00705	ScanProsite:PS00139	ScanProsite:PS00639	ScanProsite:PS00640	PANTHER:PTHR12411
PANTHER:PTHR12411:SF519	InterPro:Papain_like_cys_pep_sf	InterPro:Pept_asp_AS	InterPro:Pept_cys_AS	InterPro:Pept_his_AS	InterPro:Peptidase_C1A
InterPro:Peptidase_C1A_C	InterPro:Prot_inhib_I29	SMART:SM00645	SMART:SM00848	SUPFAM:SSF54001	SignalP:SignalP-noTM
TIGR:TC52630	TIGR:TC62368	TMHMM:TMhelix	UniParc:UPI00015C889D	ArrayExpress:VIT_03s0038g00280	EnsemblPlantsGene:VIT_03s0038g00280
EnsemblPlants:VIT_03s0038g00280.t01	unigene:Vvi.1207	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:+:256915..260014

Molecular Weight (calculated)

41495.8 Da

IEP (calculated)

5.748

GRAVY (calculated)

-0.269

Length

377 amino acids

Sequence
(BLAST)

001: MARSFSLLFF LLFSLFFVAL TSSELHSGGS DDDIIIRQVV PELGDVEGSE EENLLTADHH HFSIFKRRFG KSYASQEEHD YRFKVFKANL RRARRHQQLD
101: PSATHGVTQF SDLTPAEFRG TYLGLRPLKL PHDAQKAPIL PTNDLPEDFD WRDHGAVTAV KNQGSCGSCW SFSTTGALEG ANFLATGNLV SLSEQQLVEC
201: DHECDPEEMG SCDSGCNGGL MNTAFEYTLK AGGLMKEEDY PYTGTDRGSC KFDKTKIAAS VSNFSVISLD EDQIAANLVK NGPLAVAINA VFMQTYVGGV
301: SCPYICSKRL DHGVLLVGYG SAGYAPIRMK DKPYWIIKNS WGENWGENGF YKICRGRNVC GVDSMVSTVA AVHTTSN

Best Arabidopsis Sequence Match ( AT4G39090.1 )
(BLAST)

001: MDRLKLYFSV FVLSFFIVSV SSSDVNDGDD LVIRQVVGGA EPQVLTSEDH FSLFKRKFGK VYASNEEHDY RFSVFKANLR RARRHQKLDP SATHGVTQFS
101: DLTRSEFRKK HLGVRSGFKL PKDANKAPIL PTENLPEDFD WRDHGAVTPV KNQGSCGSCW SFSATGALEG ANFLATGKLV SLSEQQLVDC DHECDPEEAD
201: SCDSGCNGGL MNSAFEYTLK TGGLMKEEDY PYTGKDGKTC KLDKSKIVAS VSNFSVISID EEQIAANLVK NGPLAVAINA GYMQTYIGGV SCPYICTRRL
301: NHGVLLVGYG AAGYAPARFK EKPYWIIKNS WGETWGENGF YKICKGRNIC GVDSMVSTVA ATVSTTAH

Arabidopsis Description

RD19ARD19A [Source:UniProtKB/TrEMBL;Acc:A0A178V006]
SUBAcon: [golgi,endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.