Factsheet for VIT_05s0049g01580.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 3
plasma membrane 2
golgi 1
plastid 1
nucleus 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	extracellular, plasma membrane, vacuole
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0098g00930.t01	Wine grape	cytosol	95.35	95.35
VIT_08s0007g05150.t01	Wine grape	cytosol	72.09	77.5
VIT_15s0024g01100.t01	Wine grape	endoplasmic reticulum	93.02	40.82
Zm00001d020327_P001	Maize	cytosol	33.72	19.33
VIT_03s0038g00280.t01	Wine grape	endoplasmic reticulum	44.19	10.08
VIT_18s0001g13400.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	39.53	9.16
VIT_04s0023g02450.t01	Wine grape	vacuole	38.37	8.99
VIT_18s0001g13390.t01	Wine grape	endoplasmic reticulum	38.37	8.97
VIT_18s0001g13380.t01	Wine grape	extracellular	37.21	8.77
Zm00001d017233_P001	Maize	cytosol	30.23	8.5
VIT_13s0019g05120.t01	Wine grape	extracellular, golgi, vacuole	32.56	7.47
VIT_11s0016g01070.t01	Wine grape	extracellular	26.74	6.35
VIT_07s0005g02820.t01	Wine grape	vacuole	22.09	4.85

Protein Annotations

Gene3D:2.40.50.170	MapMan:50.3.4	ProteinID:CCB48610	ProteinID:CCB48610.1	UniProt:F6H8R1	EMBL:FN595496
GO:GO:0003674	GO:GO:0003824	GO:GO:0004197	GO:GO:0005575	GO:GO:0005576	GO:GO:0005615
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005764	GO:GO:0005773	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008234	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0051603	PFAM:PF00112	ScanProsite:PS00639	PANTHER:PTHR12411	PANTHER:PTHR12411:SF338
InterPro:Papain_like_cys_pep_sf	InterPro:Pept_his_AS	InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C	SUPFAM:SSF54001	UniParc:UPI0002108D2A
ArrayExpress:VIT_05s0049g01580	EnsemblPlantsGene:VIT_05s0049g01580	EnsemblPlants:VIT_05s0049g01580.t01	:	:	:

Description

No Description!

Coordinates

chr5:-:8957987..8959060

Molecular Weight (calculated)

9891.8 Da

IEP (calculated)

10.108

GRAVY (calculated)

-0.751

Length

86 amino acids

Sequence
(BLAST)

1: MQTHIGEVSR PYICSKRMAH GVLLVGHGST GHDPIRMKGR PYWIVKNSWD EKWEENGSYK SYRRPHSLHG HLGHAAFDHV PKVSTF

Best Arabidopsis Sequence Match ( AT4G16190.1 )
(BLAST)

001: MDRVVFFFLI AATLLAGSLG STVISGEVTD GFVNPIRQVV PEENDEQLLN AEHHFTLFKS KYEKTYATQV EHDHRFRVFK ANLRRARRNQ LLDPSAVHGV
101: TQFSDLTPKE FRRKFLGLKR RGFRLPTDTQ TAPILPTSDL PTEFDWREQG AVTPVKNQGM CGSCWSFSAI GALEGAHFLA TKELVSLSEQ QLVDCDHECD
201: PAQANSCDSG CSGGLMNNAF EYALKAGGLM KEEDYPYTGR DHTACKFDKS KIVASVSNFS VVSSDEDQIA ANLVQHGPLA IAINAMWMQT YIGGVSCPYV
301: CSKSQDHGVL LVGFGSSGYA PIRLKEKPYW IIKNSWGAMW GEHGYYKICR GPHNMCGMDT MVSTVAAVHT SPK

Arabidopsis Description

RD19CProbable cysteine protease RD19C [Source:UniProtKB/Swiss-Prot;Acc:Q9SUL1]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.