Factsheet for VIT_08s0007g05150.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 3
plasma membrane 1
golgi 1
plastid 1
nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	extracellular, vacuole
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0049g01580.t01	Wine grape	cytosol, mitochondrion, nucleus	77.5	72.09
VIT_16s0098g00930.t01	Wine grape	cytosol	77.5	72.09
VIT_15s0024g01100.t01	Wine grape	endoplasmic reticulum	88.75	36.22
Zm00001d020327_P001	Maize	cytosol	36.25	19.33
VIT_03s0038g00280.t01	Wine grape	endoplasmic reticulum	48.75	10.34
VIT_18s0001g13400.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	43.75	9.43
VIT_18s0001g13380.t01	Wine grape	extracellular	41.25	9.04
VIT_04s0023g02450.t01	Wine grape	vacuole	41.25	8.99
VIT_18s0001g13390.t01	Wine grape	endoplasmic reticulum	41.25	8.97
Zm00001d017233_P001	Maize	cytosol	33.75	8.82
VIT_13s0019g05120.t01	Wine grape	extracellular, golgi, vacuole	36.25	7.73
VIT_11s0016g01070.t01	Wine grape	extracellular	30.0	6.63
VIT_07s0005g02820.t01	Wine grape	vacuole	23.75	4.85

Protein Annotations

Gene3D:2.40.50.170	MapMan:50.3.4	ProteinID:CCB55332	ProteinID:CCB55332.1	UniProt:F6HKB0	EMBL:FN595991
GO:GO:0003674	GO:GO:0003824	GO:GO:0004197	GO:GO:0005575	GO:GO:0005576	GO:GO:0005615
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005764	GO:GO:0005773	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008234	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0051603	PFAM:PF00112	ScanProsite:PS00639	PANTHER:PTHR12411	PANTHER:PTHR12411:SF338
InterPro:Papain_like_cys_pep_sf	InterPro:Pept_his_AS	InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C	SUPFAM:SSF54001	UniParc:UPI0002109336
ArrayExpress:VIT_08s0007g05150	EnsemblPlantsGene:VIT_08s0007g05150	EnsemblPlants:VIT_08s0007g05150.t01	:	:	:

Description

No Description!

Coordinates

chr8:-:19080970..19081258

Molecular Weight (calculated)

9148.2 Da

IEP (calculated)

9.613

GRAVY (calculated)

-0.359

Length

80 amino acids

Sequence
(BLAST)

1: MVVGINTVFM QTHIGEVSRP YICSERMAHG VLLVGHGSTG HDPIRMKGRP YWIVKNSWDE KWGENGPYKS YRRPLLCMAT

Best Arabidopsis Sequence Match ( AT4G39090.1 )
(BLAST)

001: MDRLKLYFSV FVLSFFIVSV SSSDVNDGDD LVIRQVVGGA EPQVLTSEDH FSLFKRKFGK VYASNEEHDY RFSVFKANLR RARRHQKLDP SATHGVTQFS
101: DLTRSEFRKK HLGVRSGFKL PKDANKAPIL PTENLPEDFD WRDHGAVTPV KNQGSCGSCW SFSATGALEG ANFLATGKLV SLSEQQLVDC DHECDPEEAD
201: SCDSGCNGGL MNSAFEYTLK TGGLMKEEDY PYTGKDGKTC KLDKSKIVAS VSNFSVISID EEQIAANLVK NGPLAVAINA GYMQTYIGGV SCPYICTRRL
301: NHGVLLVGYG AAGYAPARFK EKPYWIIKNS WGETWGENGF YKICKGRNIC GVDSMVSTVA ATVSTTAH

Arabidopsis Description

RD19ARD19A [Source:UniProtKB/TrEMBL;Acc:A0A178V006]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.