Factsheet for Zm00001d017233_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020327_P001	Maize	cytosol	33.33	68.0
VIT_08s0007g05150.t01	Wine grape	cytosol	8.82	33.75
Zm00001d016446_P001	Maize	extracellular	38.56	31.81
VIT_05s0049g01580.t01	Wine grape	cytosol, mitochondrion, nucleus	8.5	30.23
VIT_16s0098g00930.t01	Wine grape	cytosol	8.17	29.07
Zm00001d006364_P001	Maize	extracellular	29.41	24.46
VIT_15s0024g01100.t01	Wine grape	endoplasmic reticulum	10.13	15.82
Zm00001d005828_P003	Maize	cytosol, nucleus, plastid	15.36	15.61
Zm00001d022297_P001	Maize	cytosol, extracellular, nucleus	3.59	15.07
Zm00001d020636_P001	Maize	extracellular	17.65	15.0
Zm00001d021615_P002	Maize	extracellular, plasma membrane, vacuole	9.48	7.9

Protein Annotations

Gene3D:3.40.50.300	Gene3D:3.90.70.10	MapMan:50.3.4	UniProt:A0A1D6HD70	ProteinID:AQK72640.1	InterPro:ATPase_AAA_core
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008234	GO:GO:0016787	GO:GO:0019538
PFAM:PF00112	PFAM:PF07724	PANTHER:PTHR12411	PANTHER:PTHR12411:SF380	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C1A
InterPro:Peptidase_C1A_C	SMART:SM00645	SUPFAM:SSF54001	UniParc:UPI0008450AAE	EnsemblPlantsGene:Zm00001d017233	EnsemblPlants:Zm00001d017233_P001
EnsemblPlants:Zm00001d017233_T001	SEG:seg	:	:	:	:

Description

Probable cysteine protease RD19C

Coordinates

chr5:+:189976014..189978953

Molecular Weight (calculated)

33779.6 Da

IEP (calculated)

7.374

GRAVY (calculated)

-0.288

Length

306 amino acids

Sequence
(BLAST)

001: MNGQGRTVDF RNTLIIMTSN LGTEHLLAGM VGKNSMKVAR DLVMQEVESA HPAAMAAESA IDTNTEHPEP EHKDLLRVYE VGDGSTMGCL HSIGSDLTQT
101: RELPELQQNV SMRSGQEAST VGKDSSRTPT SVRELVVPVC SLESGVLGKR IKRSLTGGNE MQSTQDKRSR KASMVNEAIL QHVKYQNPQA HVTHRNLIYV
201: IQDAMNFGVV SVDESQNVAI LIKHGPLAIG INAAYMQTYI EGMPCPYICG RHLDHVVLLV GYGAAGFAPI HLKDKPYWII KNSWGMNWRE NEYYKICRVP
301: TFATSA

Best Arabidopsis Sequence Match ( AT4G39090.1 )
(BLAST)

001: MDRLKLYFSV FVLSFFIVSV SSSDVNDGDD LVIRQVVGGA EPQVLTSEDH FSLFKRKFGK VYASNEEHDY RFSVFKANLR RARRHQKLDP SATHGVTQFS
101: DLTRSEFRKK HLGVRSGFKL PKDANKAPIL PTENLPEDFD WRDHGAVTPV KNQGSCGSCW SFSATGALEG ANFLATGKLV SLSEQQLVDC DHECDPEEAD
201: SCDSGCNGGL MNSAFEYTLK TGGLMKEEDY PYTGKDGKTC KLDKSKIVAS VSNFSVISID EEQIAANLVK NGPLAVAINA GYMQTYIGGV SCPYICTRRL
301: NHGVLLVGYG AAGYAPARFK EKPYWIIKNS WGETWGENGF YKICKGRNIC GVDSMVSTVA ATVSTTAH

Arabidopsis Description

RD19ARD19A [Source:UniProtKB/TrEMBL;Acc:A0A178V006]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.