Factsheet for VIT_15s0024g01100.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
vacuole 5
extracellular 3
golgi 3
plasma membrane 3
endoplasmic reticulum 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, vacuole
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0049g01580.t01	Wine grape	cytosol, mitochondrion, nucleus	40.82	93.02
VIT_16s0098g00930.t01	Wine grape	cytosol	40.82	93.02
VIT_08s0007g05150.t01	Wine grape	cytosol	36.22	88.75
Zm00001d020327_P001	Maize	cytosol	16.33	21.33
VIT_03s0038g00280.t01	Wine grape	endoplasmic reticulum	27.04	14.06
VIT_18s0001g13400.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	25.0	13.21
VIT_18s0001g13380.t01	Wine grape	extracellular	23.98	12.88
VIT_18s0001g13390.t01	Wine grape	endoplasmic reticulum	23.98	12.77
VIT_04s0023g02450.t01	Wine grape	vacuole	22.96	12.26
VIT_13s0019g05120.t01	Wine grape	extracellular, golgi, vacuole	21.43	11.2
VIT_11s0016g01070.t01	Wine grape	extracellular	18.88	10.22
Zm00001d017233_P001	Maize	cytosol	15.82	10.13
VIT_07s0005g02820.t01	Wine grape	vacuole	17.35	8.67

Protein Annotations

EntrezGene:100253965	wikigene:100253965	Gene3D:3.90.70.10	MapMan:50.3.4	EMBL:AM427185	ProteinID:CAN71324
ProteinID:CAN71324.1	ProteinID:CCB62161	ProteinID:CCB62161.1	UniProt:F6I5E3	EMBL:FN596748	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004197	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005576	GO:GO:0005615	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005764	GO:GO:0005773	GO:GO:0006508	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0008234	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0019538	GO:GO:0042626	GO:GO:0051603	GO:GO:0055085	EntrezGene:LOC100253965	wikigene:LOC100253965
PFAM:PF00112	ScanProsite:PS00639	PANTHER:PTHR12411	PANTHER:PTHR12411:SF338	InterPro:Papain_like_cys_pep_sf	InterPro:Pept_his_AS
InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C	SUPFAM:SSF54001	SignalP:SignalP-noTM	UniParc:UPI000210A264	ArrayExpress:VIT_15s0024g01100
EnsemblPlantsGene:VIT_15s0024g01100	EnsemblPlants:VIT_15s0024g01100.t01	RefSeq:XP_002269585	RefSeq:XP_002269585.2	:	:

Description

No Description!

Coordinates

chr15:+:2138070..2140367

Molecular Weight (calculated)

21631.8 Da

IEP (calculated)

8.494

GRAVY (calculated)

-0.181

Length

196 amino acids

Sequence
(BLAST)

001: MDAMIDLFTI PIGIFIWTST QVSACQRGSN NDSTVLLQKP DAAKAFGSFL DEDQIAANLV KNGQMVVGIN TVFMQTHIGE VSRPYVCSER MAHGVLLVGH
101: GSTGHDPIRM KGRPYWIVKN SWDEKWGENG SYKSYRRPHS LHGHLGHAAF DHVPPPFTSS FSVLITVPNP ILQAFSQKSA RSYRGSFPVG ECLVNT

Best Arabidopsis Sequence Match ( AT4G16190.1 )
(BLAST)

001: MDRVVFFFLI AATLLAGSLG STVISGEVTD GFVNPIRQVV PEENDEQLLN AEHHFTLFKS KYEKTYATQV EHDHRFRVFK ANLRRARRNQ LLDPSAVHGV
101: TQFSDLTPKE FRRKFLGLKR RGFRLPTDTQ TAPILPTSDL PTEFDWREQG AVTPVKNQGM CGSCWSFSAI GALEGAHFLA TKELVSLSEQ QLVDCDHECD
201: PAQANSCDSG CSGGLMNNAF EYALKAGGLM KEEDYPYTGR DHTACKFDKS KIVASVSNFS VVSSDEDQIA ANLVQHGPLA IAINAMWMQT YIGGVSCPYV
301: CSKSQDHGVL LVGFGSSGYA PIRLKEKPYW IIKNSWGAMW GEHGYYKICR GPHNMCGMDT MVSTVAAVHT SPK

Arabidopsis Description

RD19CProbable cysteine protease RD19C [Source:UniProtKB/Swiss-Prot;Acc:Q9SUL1]
SUBAcon: [extracellular,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.