Factsheet for Zm00001d020327_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g05150.t01	Wine grape	cytosol	19.33	36.25
VIT_05s0049g01580.t01	Wine grape	cytosol, mitochondrion, nucleus	19.33	33.72
Zm00001d017233_P001	Maize	cytosol	68.0	33.33
VIT_16s0098g00930.t01	Wine grape	cytosol	18.67	32.56
Zm00001d016446_P001	Maize	extracellular	77.33	31.27
Zm00001d006364_P001	Maize	extracellular	48.67	19.84
VIT_15s0024g01100.t01	Wine grape	endoplasmic reticulum	21.33	16.33
Zm00001d005828_P003	Maize	cytosol, nucleus, plastid	27.33	13.62
Zm00001d020636_P001	Maize	extracellular	28.0	11.67
Zm00001d021615_P002	Maize	extracellular, plasma membrane, vacuole	20.67	8.45
Zm00001d022297_P001	Maize	cytosol, extracellular, nucleus	4.0	8.22

Protein Annotations

Gene3D:3.90.70.10	MapMan:50.3.4	UniProt:A0A1D6I3J9	GO:GO:0003674	GO:GO:0003824	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008234	GO:GO:0016787	GO:GO:0019538
ProteinID:ONM54718.1	PFAM:PF00112	PANTHER:PTHR12411	PANTHER:PTHR12411:SF380	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C1A
InterPro:Peptidase_C1A_C	SMART:SM00645	SUPFAM:SSF54001	UniParc:UPI0008446081	EnsemblPlantsGene:Zm00001d020327	EnsemblPlants:Zm00001d020327_P001
EnsemblPlants:Zm00001d020327_T001	:	:	:	:	:

Description

Probable cysteine protease RD19C

Coordinates

chr7:-:106812558..106813992

Molecular Weight (calculated)

16890.5 Da

IEP (calculated)

9.318

GRAVY (calculated)

-0.215

Length

150 amino acids

Sequence
(BLAST)

001: MDAKQTWLFA MEASDIISKA GGLEREKDYR YTRSDGKCKF DKSKIIASIQ NFGVVSVDEG QKVANLIKHG PLAIGINAAY MQTYIEGMPC PYICGRHLDH
101: VVLLVGYGAA GFAPIRLKDK PYWIIKNSWG MNWRENGYYK ICRVPTFATS

Best Arabidopsis Sequence Match ( AT2G21430.1 )
(BLAST)

001: MDYHLRVLFS VSLIFVFVSV SVCGDEDVLI RQVVDETEPK VLSSEDHFTL FKKKFGKVYG SIEEHYYRFS VFKANLLRAM RHQKMDPSAR HGVTQFSDLT
101: RSEFRRKHLG VKGGFKLPKD ANQAPILPTQ NLPEEFDWRD RGAVTPVKNQ GSCGSCWSFS TTGALEGAHF LATGKLVSLS EQQLVDCDHE CDPEEEGSCD
201: SGCNGGLMNS AFEYTLKTGG LMREKDYPYT GTDGGSCKLD RSKIVASVSN FSVVSINEDQ IAANLIKNGP LAVAINAAYM QTYIGGVSCP YICSRRLNHG
301: VLLVGYGSAG FSQARLKEKP YWIIKNSWGE SWGENGFYKI CKGRNICGVD SLVSTVAATT S

Arabidopsis Description

RD19BProbable cysteine protease RD19B [Source:UniProtKB/Swiss-Prot;Acc:P43295]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.