Factsheet for AT4G39090.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, vacuole

Predictor Summary:

endoplasmic reticulum 6
golgi 6
extracellular 5
vacuole 5
plasma membrane 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, vacuole
Any Predictor:	secretory
BaCelLo:	endoplasmic reticulum, extracellular, golgi
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011877.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	91.85	92.1
CDY41960	Canola	endoplasmic reticulum, extracellular, vacuole	91.3	91.55
CDX90310	Canola	vacuole	90.22	89.97
CDY71205	Canola	vacuole	88.59	88.59
AT2G21430.1	Thale cress	endoplasmic reticulum	80.98	82.55
VIT_03s0038g00280.t01	Wine grape	endoplasmic reticulum	76.9	75.07
KRH29385	Soybean	extracellular	73.64	74.66
Bra010706.1-P	Field mustard	vacuole	90.22	73.94
PGSC0003DMT400079506	Potato	endoplasmic reticulum, extracellular, vacuole	73.64	73.64
Solyc01g110110.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	73.64	73.44
KRH24406	Soybean	extracellular	72.55	73.15
AT4G16190.1	Thale cress	endoplasmic reticulum, extracellular	68.48	67.56
CDY42605	Canola	plastid	32.34	56.13
AT3G54940.2	Thale cress	endoplasmic reticulum, extracellular	50.82	50.95
AT3G45310.1	Thale cress	extracellular, vacuole	36.96	37.99
AT5G60360.3	Thale cress	endoplasmic reticulum, extracellular, vacuole	37.23	37.95
AT1G02305.1	Thale cress	extracellular, vacuole	21.74	22.1
AT4G01610.1	Thale cress	extracellular, golgi, vacuole	20.65	21.17
AT1G02300.1	Thale cress	extracellular	21.2	20.58

Protein Annotations

MapMan:19.4.1.1	Gene3D:3.90.70.10	EntrezGene:830064	UniProt:A0A178V006	ProteinID:AEE87016.1	EMBL:AF083750
EMBL:AK226399	ArrayExpress:AT4G39090	EnsemblPlantsGene:AT4G39090	RefSeq:AT4G39090	TAIR:AT4G39090	RefSeq:AT4G39090-TAIR-G
EnsemblPlants:AT4G39090.1	TAIR:AT4G39090.1	EMBL:AY080598	EMBL:AY087621	EMBL:AY133844	Unigene:At.2850
ProteinID:BAA02373.1	MEROPS:C01.022	ProteinID:CAB38829.1	ProteinID:CAB80572.1	GO:GO:0000323	GO:GO:0003674
GO:GO:0003824	GO:GO:0004197	GO:GO:0005575	GO:GO:0005576	GO:GO:0005615	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005764	GO:GO:0005773	GO:GO:0006508
GO:GO:0006950	GO:GO:0006970	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008234
GO:GO:0009056	GO:GO:0009605	GO:GO:0009607	GO:GO:0009628	GO:GO:0009651	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0042742	GO:GO:0051603	RefSeq:NP_568052.1	ProteinID:OAO98967.1
UniProt:P43296	PFAM:PF00112	PFAM:PF08246	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230
PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281
PRINTS:PR00705	ScanProsite:PS00139	ScanProsite:PS00639	ScanProsite:PS00640	PANTHER:PTHR12411	PANTHER:PTHR12411:SF519
InterPro:Papain_like_cys_pep_sf	InterPro:Pept_asp_AS	InterPro:Pept_cys_AS	InterPro:Pept_his_AS	InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C
InterPro:Prot_inhib_I29	Symbol:RD19	SMART:SM00645	SMART:SM00848	SUPFAM:SSF54001	SignalP:SignalP-noTM
UniParc:UPI00000017A8	SEG:seg	:	:	:	:

Description

RD19ARD19A [Source:UniProtKB/TrEMBL;Acc:A0A178V006]

Coordinates

chr4:-:18215542..18217616

Molecular Weight (calculated)

40420.7 Da

IEP (calculated)

7.185

GRAVY (calculated)

-0.306

Length

368 amino acids

Sequence
(BLAST)

001: MDRLKLYFSV FVLSFFIVSV SSSDVNDGDD LVIRQVVGGA EPQVLTSEDH FSLFKRKFGK VYASNEEHDY RFSVFKANLR RARRHQKLDP SATHGVTQFS
101: DLTRSEFRKK HLGVRSGFKL PKDANKAPIL PTENLPEDFD WRDHGAVTPV KNQGSCGSCW SFSATGALEG ANFLATGKLV SLSEQQLVDC DHECDPEEAD
201: SCDSGCNGGL MNSAFEYTLK TGGLMKEEDY PYTGKDGKTC KLDKSKIVAS VSNFSVISID EEQIAANLVK NGPLAVAINA GYMQTYIGGV SCPYICTRRL
301: NHGVLLVGYG AAGYAPARFK EKPYWIIKNS WGETWGENGF YKICKGRNIC GVDSMVSTVA ATVSTTAH

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.