Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 7
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71205 | Canola | vacuole | 95.12 | 95.38 |
| CDY41960 | Canola | endoplasmic reticulum, extracellular, vacuole | 91.6 | 92.1 |
| AT4G39090.1 | Thale cress | endoplasmic reticulum, golgi, vacuole | 89.97 | 90.22 |
| Bra010706.1-P | Field mustard | vacuole | 100.0 | 82.18 |
| CDX99593 | Canola | endoplasmic reticulum, golgi | 75.61 | 81.34 |
| CDY15894 | Canola | endoplasmic reticulum | 78.59 | 80.11 |
| KRH29385 | Soybean | extracellular | 72.9 | 74.1 |
| KRH24406 | Soybean | extracellular | 73.17 | 73.97 |
| PGSC0003DMT400079506 | Potato | endoplasmic reticulum, extracellular, vacuole | 73.71 | 73.91 |
| CDY13816 | Canola | cytosol | 56.64 | 73.85 |
| VIT_03s0038g00280.t01 | Wine grape | endoplasmic reticulum | 74.8 | 73.21 |
| Solyc01g110110.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 72.9 | 72.9 |
| CDY32227 | Canola | endoplasmic reticulum, extracellular, vacuole | 68.29 | 68.48 |
| CDY34441 | Canola | endoplasmic reticulum | 68.02 | 68.21 |
| CDX90537 | Canola | endoplasmic reticulum | 65.04 | 65.57 |
| CDY09707 | Canola | endoplasmic reticulum, extracellular | 64.5 | 65.03 |
| CDX82031 | Canola | nucleus | 44.99 | 62.64 |
| CDY14798 | Canola | extracellular | 19.51 | 59.02 |
| CDY42605 | Canola | plastid | 32.25 | 56.13 |
| CDX73424 | Canola | extracellular | 50.41 | 51.1 |
| CDY56961 | Canola | endoplasmic reticulum | 50.41 | 51.1 |
| CDY09213 | Canola | vacuole | 37.67 | 38.72 |
| CDY09216 | Canola | vacuole | 37.4 | 38.44 |
| CDX80173 | Canola | endoplasmic reticulum | 36.04 | 37.15 |
| CDY31550 | Canola | endoplasmic reticulum, extracellular, vacuole | 36.04 | 37.05 |
| CDY19784 | Canola | cytosol, nucleus, plastid | 23.58 | 36.25 |
| CDX88753 | Canola | vacuole | 31.98 | 33.81 |
| CDX71035 | Canola | vacuole | 28.73 | 30.9 |
| CDX71045 | Canola | endoplasmic reticulum | 28.73 | 29.28 |
| CDY64994 | Canola | cytosol, nucleus, vacuole | 18.43 | 27.42 |
| CDX85150 | Canola | extracellular, golgi, vacuole | 21.68 | 23.46 |
| CDY61859 | Canola | extracellular, golgi, vacuole | 22.49 | 22.8 |
| CDY58223 | Canola | vacuole | 21.14 | 21.79 |
| CDX88755 | Canola | extracellular, plasma membrane, vacuole | 23.85 | 21.52 |
| CDY07129 | Canola | extracellular | 20.87 | 21.51 |
| CDY64824 | Canola | cytosol, mitochondrion, vacuole | 8.94 | 18.86 |
| CDY38163 | Canola | golgi, vacuole | 7.05 | 16.25 |
Protein Annotations
| MapMan:19.4.1.1 | Gene3D:3.90.70.10 | GO:A0A078DM97 | MEROPS:C01.022 | EnsemblPlants:CDX90310 | ProteinID:CDX90310 |
| ProteinID:CDX90310.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006508 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008234 | GO:GO:0016787 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00150893001 | PFAM:PF00112 |
| PFAM:PF08246 | PRINTS:PR00705 | ScanProsite:PS00139 | ScanProsite:PS00639 | ScanProsite:PS00640 | PANTHER:PTHR12411 |
| PANTHER:PTHR12411:SF519 | InterPro:Papain_like_cys_pep_sf | InterPro:Pept_asp_AS | InterPro:Pept_cys_AS | InterPro:Pept_his_AS | InterPro:Peptidase_C1A |
| InterPro:Peptidase_C1A_C | InterPro:Prot_inhib_I29 | SMART:SM00645 | SMART:SM00848 | SUPFAM:SSF54001 | SignalP:SignalP-noTM |
| UniParc:UPI0004EF1EB5 | SEG:seg | : | : | : | : |
Description
BnaA08g16740D
Coordinates
chrLK031862:-:1184549..1186581
Molecular Weight (calculated)
40319.7 Da
IEP (calculated)
7.402
GRAVY (calculated)
-0.307
Length
369 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRLKLSLSL FVLFFLVLSA SSDGNEGGDD LVIKQVVDGG AEPNVLSSED HFSLFKKKFG KVYASSEEHD YRFSVFKTNL RRARRHQKLD PSARHGVTQF
101: SDLTRSEFKK KHLGVRGGFK LPKDANKAPI LPTENLPEEF DWRDRGAVTP VKNQGSCGSC WSFSATGALE GANFLATGKL VSLSEQQLVD CDHECDPEEA
201: GSCDSGCNGG LMNSAFEYTL KTGGLMREED YPYTGKDGPT CKLDKSKIVA SVSNFSVISI DEEQIAANLV KNGPLAVAIN AAYMQTYIGG VSCPYICMRR
301: LNHGVLLVGY GSAGYAPARF KEKPYWIIKN SWGETWGENG FYKICRGRNV CGVDSLVSTV TAAVSPTAH
101: SDLTRSEFKK KHLGVRGGFK LPKDANKAPI LPTENLPEEF DWRDRGAVTP VKNQGSCGSC WSFSATGALE GANFLATGKL VSLSEQQLVD CDHECDPEEA
201: GSCDSGCNGG LMNSAFEYTL KTGGLMREED YPYTGKDGPT CKLDKSKIVA SVSNFSVISI DEEQIAANLV KNGPLAVAIN AAYMQTYIGG VSCPYICMRR
301: LNHGVLLVGY GSAGYAPARF KEKPYWIIKN SWGETWGENG FYKICRGRNV CGVDSLVSTV TAAVSPTAH
001: MDRLKLYFSV FVLSFFIVSV SSSDVNDGDD LVIRQVVGGA EPQVLTSEDH FSLFKRKFGK VYASNEEHDY RFSVFKANLR RARRHQKLDP SATHGVTQFS
101: DLTRSEFRKK HLGVRSGFKL PKDANKAPIL PTENLPEDFD WRDHGAVTPV KNQGSCGSCW SFSATGALEG ANFLATGKLV SLSEQQLVDC DHECDPEEAD
201: SCDSGCNGGL MNSAFEYTLK TGGLMKEEDY PYTGKDGKTC KLDKSKIVAS VSNFSVISID EEQIAANLVK NGPLAVAINA GYMQTYIGGV SCPYICTRRL
301: NHGVLLVGYG AAGYAPARFK EKPYWIIKNS WGETWGENGF YKICKGRNIC GVDSMVSTVA ATVSTTAH
101: DLTRSEFRKK HLGVRSGFKL PKDANKAPIL PTENLPEDFD WRDHGAVTPV KNQGSCGSCW SFSATGALEG ANFLATGKLV SLSEQQLVDC DHECDPEEAD
201: SCDSGCNGGL MNSAFEYTLK TGGLMKEEDY PYTGKDGKTC KLDKSKIVAS VSNFSVISID EEQIAANLVK NGPLAVAINA GYMQTYIGGV SCPYICTRRL
301: NHGVLLVGYG AAGYAPARFK EKPYWIIKNS WGETWGENGF YKICKGRNIC GVDSMVSTVA ATVSTTAH
Arabidopsis Description
RD19ARD19A [Source:UniProtKB/TrEMBL;Acc:A0A178V006]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.